PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10185_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 308aa    MW: 35035.6 Da    PI: 7.0596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10185_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05101120120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++C+ C+k+F+r  n++ H+
  RrC10185_p2 101 FSCSVCNKTFNRFNNMQMHM 120
                  89*****************9 PP
2zf-C2H210.90.0014186209123
                  EEET.TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCp.dCgksFsrksnLkrHirtH 23 
                  ++C  +C k+F  + + ++H +++
  RrC10185_p2 186 FRCRkKCEKTFAVRGDWRTHEKNC 209
                  89******************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.89E-597122No hitNo description
Gene3DG3DSA:3.30.160.609.9E-6101120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.263101128IPR007087Zinc finger, C2H2
PROSITE patternPS000280103123IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.3E-4172207IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010087Biological Processphloem or xylem histogenesis
GO:0010305Biological Processleaf vascular tissue pattern formation
GO:0010588Biological Processcotyledon vascular tissue pattern formation
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MYSNNQYCIS ADEDSVVLRL GPPGQQYPKH HKPTSTKPSS NHESYHDLPL TNPNEVTVAL  60
HIGPPVSEKD TSGDNHEGLT ARQGQYWIPS LSQILVGPTQ FSCSVCNKTF NRFNNMQMHM  120
WGHGSQYRKG PESLRGTKSS SSILRLPCYC CAEGCKNNID HPRAKPLKDF RTLQTHYKRK  180
HGAKPFRCRK KCEKTFAVRG DWRTHEKNCG KVWFCVCGSD FKHKRSLKDH VRAFGDGHAA  240
HTVGDRVVSL GDGEEEDDDD DYMEDEDERG DDDEEEENGN GESGRGEKNC GIRYEQFRRY  300
GQISNDNY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442592.10.0PREDICTED: zinc finger protein WIP6-like
RefseqXP_018488426.10.0PREDICTED: zinc finger protein WIP6-like
SwissprotQ9FX681e-180ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A397YVD30.0A0A397YVD3_BRACM; Uncharacterized protein
TrEMBLM4DTH90.0M4DTH9_BRARP; Uncharacterized protein
STRINGBra019822.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-177C2H2-like zinc finger protein