PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10181_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 608aa    MW: 69767.1 Da    PI: 9.2023
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10181_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.84.4e-1072135861373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA+avs +d+++a+ lL  +++++s++gd ++Rla+yf++ L+arla++++++y +l++++ts    ++ l+a++ ++ v+P+ k++   a
  RrC10181_p1 213 LRSLLLSCAQAVSVNDHRRAEGLLRLVRQHSSSYGDGTERLAHYFANSLEARLAGTGTQIYTSLSSKKTS---AADMLKAYQSYVSVCPFKKIGIAFA 307
                  689**************************************************************99999...9************************ PP

         GRAS  99 NqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  N+ I + +++   +++HiiDf+is+G+QW +L + L  R++++ +lRiTg++ p+ g   ++ + etg+rLak++++l+vpfe+n+ +a+++e+++le
  RrC10181_p1 308 NHSIQQLAKKTmpDTIHIIDFGISYGFQWHSLVHRLHWRRGSSCKLRITGIDLPQRGfrPANGVIETGHRLAKYCKKLNVPFEYNA-IAQKWETIKLE 404
                  **********999******************************************9999***************************.7********** PP

         GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290
                  +L++++gE +aVn  ++  +lld++v+++s+rd vL+l+ +++P++++ +    ++n++ F++rf e ++++s+lfd+ +++l re+  r++ E+e+ 
  RrC10181_p1 405 DLKLREGEFVAVNTLFRFRNLLDDTVAVDSPRDVVLRLIHKIRPNIFIPSILSGSYNAPFFVTRFREVMYHFSSLFDMCDTTLTREDPMRVVFEKEFY 502
                  ************************************************************************************************** PP

         GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  grei+nvvaceg++r+er e++++W +r+ +aG++++p++++ +++ +l++ k + s+++ v+++ +++++gWk+r +++ S+W
  RrC10181_p1 503 GREIMNVVACEGTARVERPESYKQWGSRMVRAGLRQLPVEKELVQKLRLMVDKEYkSKEFDVDQDGNWFLQGWKGRLVYASSFW 586
                  ***************************************************9998899************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.617187566IPR005202Transcription factor GRAS
PfamPF035141.5E-104213586IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    Send to blast
MTSSGHTSRT TTTTTSSDWS FDSLENNRPS WMQTPTPNNF VFQSTTPSTR SSPNGGSNTV  60
TRSSISDDLV TNMFKDSNWA LQFKRGVEEA SKFLPKTTQL VIDEENHHHH HPHYVPYRIT  120
GKKCHWRDED DEHLPEERSK KQSAVYADDP ELADMFEKIL LFGDPKENPK CILNETSQKE  180
PPTKSPPSPK GEITTAYTRG IKPSAYVKEI PDLRSLLLSC AQAVSVNDHR RAEGLLRLVR  240
QHSSSYGDGT ERLAHYFANS LEARLAGTGT QIYTSLSSKK TSAADMLKAY QSYVSVCPFK  300
KIGIAFANHS IQQLAKKTMP DTIHIIDFGI SYGFQWHSLV HRLHWRRGSS CKLRITGIDL  360
PQRGFRPANG VIETGHRLAK YCKKLNVPFE YNAIAQKWET IKLEDLKLRE GEFVAVNTLF  420
RFRNLLDDTV AVDSPRDVVL RLIHKIRPNI FIPSILSGSY NAPFFVTRFR EVMYHFSSLF  480
DMCDTTLTRE DPMRVVFEKE FYGREIMNVV ACEGTARVER PESYKQWGSR MVRAGLRQLP  540
VEKELVQKLR LMVDKEYKSK EFDVDQDGNW FLQGWKGRLV YASSFWVSVY YSFLLQVYTY  600
TLQITQAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4222058625377Protein SCARECROW
5b3h_D4e-4222058625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477386.10.0PREDICTED: scarecrow-like protein 33
RefseqXP_018477387.10.0PREDICTED: scarecrow-like protein 33
SwissprotP0C8830.0SCL33_ARATH; Scarecrow-like protein 33
TrEMBLA0A078H2V40.0A0A078H2V4_BRANA; BnaA04g16850D protein
STRINGBo4g168030.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.10.0GRAS family protein