PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC10086_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 387aa MW: 42866.4 Da PI: 7.4244

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC10086_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.1	1.3e-12	133	171	2	44
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44 r +h++ E+rRR++iN++f+ Lr+l+P++ ++K +Ka+ L RrC10086_p1 133 RSKHSATEQRRRSKINDRFQMLRQLIPNS----DQKRDKASFL 171 889*************************9....8999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	9.9E-15	130	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.252	131	181	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.16E-12	132	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-10	133	171	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.82E-10	133	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MEQQRVPKPE LSPPMMFTAA ASQQAGGGNE RNAVEENSNS NSSSNYGTVA SGGTKVTVFD 60 KYPFERFQFS LILSSQSFMD MLRSAKGTSQ DDDFDDEEDF VMKKESSSTS QMIHRDLRAR 120 GGGGNDQKLN TPRSKHSATE QRRRSKINDR FQMLRQLIPN SDQKRDKASF LLEEKTSKYE 180 TPYQGWNHDP AKLVNWQRNN QHLVPEGTVA FAPKLEEEKN NIPIPVLATT HGVVIDRPET 240 LNRATPTTGT VPLSAQSNSF LSPVIAGNPV THLHTRVAAS ETVEPSASSR NHTQPLKEEG 300 DDEEVHAGNI SISSVYSQGR LVKTLREALE NSGVDLTKAS ISVEIELAKQ SSSFKDHELR 360 GPVSRTGNDD DAKQSRKPKR LKTNNTS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MEQQRVPKPE LSPPMMFTAA ASQQAGGGNE RNAVEENSNS NSSSNYGTVA SGGTKVTVFD  60
KYPFERFQFS LILSSQSFMD MLRSAKGTSQ DDDFDDEEDF VMKKESSSTS QMIHRDLRAR  120
GGGGNDQKLN TPRSKHSATE QRRRSKINDR FQMLRQLIPN SDQKRDKASF LLEEKTSKYE  180
TPYQGWNHDP AKLVNWQRNN QHLVPEGTVA FAPKLEEEKN NIPIPVLATT HGVVIDRPET  240
LNRATPTTGT VPLSAQSNSF LSPVIAGNPV THLHTRVAAS ETVEPSASSR NHTQPLKEEG  300
DDEEVHAGNI SISSVYSQGR LVKTLREALE NSGVDLTKAS ISVEIELAKQ SSSFKDHELR  360
GPVSRTGNDD DAKQSRKPKR LKTNNTS

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269\|PubMed:15680330}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by cold treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018445698.1	0.0	PREDICTED: transcription factor BIM1 isoform X5
Swissprot	Q9LEZ3	1e-151	BIM1_ARATH; Transcription factor BIM1
TrEMBL	A0A3P6E9A3	0.0	A0A3P6E9A3_BRAOL; Uncharacterized protein (Fragment)
STRING	Bra009322.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6967	27	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08130.6	1e-142	bHLH family protein

Publications ? help Back to Top
Liang T, et al. UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis. Dev. Cell, 2018. 44(4): p. 512-523.e5 [PMID:29398622]