PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC10018_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ZF-HD
Protein Properties Length: 264aa    MW: 28508.8 Da    PI: 8.1664
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC10018_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.13.8e-3252108358
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                   v+YkeClkNhAa +Ggha+DGCgEf+ps++ + +++++l+C ACgCHRnFHRre +
  RrC10018_p1  52 VVTYKECLKNHAAGIGGHALDGCGEFIPSPSFNaNDPTSLTCDACGCHRNFHRREDD 108
                  689****************************99899******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-2551106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.2E-2753107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-3154106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.38255106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.25E-15167230IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-25170229IPR009057Homeodomain-like
TIGRFAMsTIGR015653.3E-23173229IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MDVISTSATI VSDLDSRQPV TEAPTRIQPA KPISFSNGKR NHDHQHHASQ VVVTYKECLK  60
NHAAGIGGHA LDGCGEFIPS PSFNANDPTS LTCDACGCHR NFHRREDDLS NVSAVVPRIE  120
YRPHNRHQLP PPPLPPVGAG SQDDDDPASP PPISSSYMLL ALSGGATAVP VSRKRFRTKF  180
SEFQKGKMFE FAERVGWRMP KADDVDVVGF CREIGVEKSV FKVWMHNNKI PGRGGARRAN  240
GDGGGGGDGR ESVPTNGNVS FSST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-201722321676ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443190.11e-165PREDICTED: zinc-finger homeodomain protein 8
SwissprotQ9LXG01e-129ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A397XR591e-150A0A397XR59_BRACM; Uncharacterized protein
STRINGBra008712.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22202575
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.11e-118homeobox protein 30
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]