PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 50114.m000014 | ||||||||
Common Name | LOC8265845, RCOM_1610140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | C2H2 | ||||||||
Protein Properties | Length: 230aa MW: 25851.3 Da PI: 6.9155 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.3 | 0.0011 | 2 | 24 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F+++ L H +H 50114.m000014 2 FECKACKKVFNSHQALGGHRASH 24 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 6.3E-10 | 2 | 26 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.48E-7 | 2 | 24 | No hit | No description |
SMART | SM00355 | 0.13 | 2 | 24 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.076 | 2 | 29 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 4 | 24 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.48E-7 | 79 | 106 | No hit | No description |
Pfam | PF13912 | 1.0E-13 | 83 | 107 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.44 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.369 | 84 | 106 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MFECKACKKV FNSHQALGGH RASHKKVKGC FAARLDQGLD DSLADEDVIT HEEFFPTKSS 60 STFQFDHGSN PPLASTSKRK SKVHECSICH RVFSSGQALG GHKRCHWITS NSPDTSSLAK 120 FHQFQDHIEQ IQQRPKFTNT SETLDLSLDL NLPAPADHRD HNGVKRDPPA NQPSFKVSTE 180 IYLKTWVGVE AKEKDNNHQQ HQNEDDNKDN NNNNNCNGSM QNVEDEADSK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 50114.m000014 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002540465.2 | 1e-173 | zinc finger protein ZAT10, partial | ||||
TrEMBL | B9RD61 | 1e-168 | B9RD61_RICCO; Uncharacterized protein | ||||
TrEMBL | B9TQE6 | 1e-171 | B9TQE6_RICCO; Uncharacterized protein (Fragment) | ||||
STRING | XP_002511650.1 | 1e-168 | (Ricinus communis) | ||||
STRING | XP_002540465.1 | 1e-172 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7511 | 8 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 1e-26 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | 50114.m000014 |
Entrez Gene | 8265845 |