PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 30226.m002055 | ||||||||
Common Name | RCOM_1778810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 310aa MW: 34616.1 Da PI: 9.4766 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 51.1 | 3e-16 | 251 | 294 | 5 | 48 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 +r++r++kNRe+A rsR+RK+a++ eLe kv LeaeN++L+k+ 30226.m002055 251 RRQKRMIKNRESAARSRARKQAYTNELEHKVSRLEAENERLRKR 294 79****************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.1E-16 | 240 | 295 | No hit | No description |
SMART | SM00338 | 5.2E-14 | 247 | 309 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.553 | 249 | 304 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 9.2E-14 | 251 | 294 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.38E-12 | 251 | 298 | No hit | No description |
CDD | cd14707 | 7.73E-21 | 251 | 293 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 254 | 269 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MGIQTMGSQA DGSSNGKQSQ FQPLARQNSM YSLTLDEVQH QLGDLGKPLS SMNLDELLKN 60 VWTAEANHTI GMEVEGTQLA NQTALQRQAS LSLTSALSKK TVDEVWRDIQ EGKNNEGKKS 120 RDRQPTLGEM TLEDFLVKAG VVAEASSEKK DDSPVVRVET NVGSQFPQQS QWIQYPHPQY 180 QHPQQSMMGV YLPAQSMPQP LHMGAGAVLD VSYPENQLSL PTSLMGTLSD VQTPARKRGT 240 PEDMMEKTVE RRQKRMIKNR ESAARSRARK QAYTNELEHK VSRLEAENER LRKRKVILGG 300 ELKKGMLISA |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00409 | DAP | Transfer from AT3G56850 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 30226.m002055 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015584621.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Refseq | XP_015584623.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Refseq | XP_025015910.1 | 0.0 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 isoform X1 | ||||
Swissprot | Q9LES3 | 4e-82 | AI5L2_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 2 | ||||
TrEMBL | B9REP3 | 0.0 | B9REP3_RICCO; DNA binding protein, putative | ||||
STRING | XP_002512212.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1320 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G56850.1 | 4e-75 | ABA-responsive element binding protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 30226.m002055 |
Publications ? help Back to Top | |||
---|---|---|---|
|