PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30226.m001993
Common NameRCOM_1771510
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 295aa    MW: 33062.4 Da    PI: 9.8832
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30226.m001993genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.8e-32223277155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    k+r++Wt++LH+rFve+v++LGG+ekAtPk il+lm+v+gLt+ hvkSHLQkYR+
  30226.m001993 223 KTRIKWTQDLHKRFVECVDRLGGAEKATPKLILKLMGVQGLTIFHVKSHLQKYRI 277
                    68****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.9220280IPR017930Myb domain
SuperFamilySSF466891.43E-16222277IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23223277IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.6E-28223278IPR009057Homeodomain-like
PfamPF002493.5E-9227276IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSTQKRKVLE HNIGSLLYQG SCKYTKSFWE KLLSSQVQPQ QQKQPGNMRV FFESQLPDSQ  60
GGSMDVNPWN SNSSSINPGH FISPTSAGLF AMEGRMGFTQ GDLSTVGSLS ICTQVTETGT  120
LVMQTHEDSL DDPQSPVNFS IQNNNNPRSA EKIHMYRSSP GNDLFPPILQ KSPNKFTTLN  180
QVRQGHISFK NHQSREAGYN PFSIQYAKPS SYFKSSGADI ACKTRIKWTQ DLHKRFVECV  240
DRLGGAEKAT PKLILKLMGV QGLTIFHVKS HLQKYRIARY IPESTEGIFL SSLLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-22223280259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-22223280259Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-22223280158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-22223280158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-22223280158Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-22223280158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-22223280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-22223280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-22223280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-22223280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-22223280259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-22223280259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30226.m001993
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025011876.10.0myb family transcription factor PHL5-like
TrEMBLB9REI30.0B9REI3_RICCO; Uncharacterized protein
STRINGXP_002512152.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1787557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.25e-34G2-like family protein