PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30209.m001510
Common NameRCOM_1742220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HB-other
Protein Properties Length: 401aa    MW: 43968.5 Da    PI: 6.8502
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30209.m001510genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.91.1e-0534742555
                   --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
       Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                   p +e    LA+k            ++ +qV +WFqNrR+  
  30209.m001510 34 PAKEVLVALAEKFsespdrkgkfVVQMKQVWNWFQNRRYAV 74
                   566666666666666666666667899***********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.92E-8476IPR009057Homeodomain-like
SMARTSM003890.0056781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-61380IPR009057Homeodomain-like
CDDcd000866.81E-41372No hitNo description
PfamPF167192.6E-39134251IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MGRPPSNGGP AFRFMSNEVA EMESILHDHQ YVMPAKEVLV ALAEKFSESP DRKGKFVVQM  60
KQVWNWFQNR RYAVRTKTSK TPVKLNVTPM SREESIPVRS VPQPVAAPIP APVPAAMATP  120
PVPSTGRATT ETSYMEFEAK SARDGAWYDV GTFLSHRHLD TGDPEVLVRF AGFGPDEDEW  180
INIRKHVRQR SLPCEASECV AVLPGDLILC FQEGKDQALY FDAHVLDAQR RRHDVRGCRC  240
RFLVRYDHDH SEQLFLNLDD AYLVLNPFDP QEIVPLRKVC RRPETDYRLQ QLHAANDSAT  300
ADQQKTSTDP STASVQRINV SAAETMQKQQ TVDATTAAPI SNANASLVAK STITETKAAA  360
TSNAGNPSAL LASSAVNVES NVAAPSGVSG ASVENLPGGK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-431352844134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-431352844134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-431352844134SHH1 SAWADEE
4iur_B7e-431352844134SHH1 SAWADEE
4iut_A7e-431352844134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-431352844134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-431352844134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-431352844134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-431352844134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-431352844134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30209.m001510
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574201.10.0protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-142SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLB9RX940.0B9RX94_RICCO; DNA binding protein, putative
STRINGXP_002518363.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68163139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.21e-126sequence-specific DNA binding transcription factors;sequence-specific DNA binding