PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30198.m000869
Common NameRCOM_1706450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 213aa    MW: 24265.9 Da    PI: 8.4321
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30198.m000869genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.11.6e-133880754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                     Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  30198.m000869 38 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQDL 80
                   57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6533180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-183295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-123485No hitNo description
SMARTSM003534.2E-153786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-173795IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-113880IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MFLQNEELDS WAMDEAFSYY DSSSPDGAAS SAASKNIVSE RNRRKKLNER LFALRAVVPN  60
ISKMDKASII KDAIDYIQDL HEQERRIQAE IMELESGKLK KNNNLGYDFE QELPVLLRSK  120
KKKIDQFYDS TGSRACPIEL LELSVAYMGE KTLLVSLTCS KRTDTMVKLC EVFESLKLKI  180
ITANITTVSG RLLKTVFIEP LLKNKKEENN TKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1436105971Transcription factor MYC2
5gnj_B1e-1436105971Transcription factor MYC2
5gnj_E1e-1436105971Transcription factor MYC2
5gnj_F1e-1436105971Transcription factor MYC2
5gnj_G1e-1436105971Transcription factor MYC2
5gnj_I1e-1436105971Transcription factor MYC2
5gnj_M1e-1436105971Transcription factor MYC2
5gnj_N1e-1436105971Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30198.m000869
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574137.11e-144transcription factor bHLH35 isoform X2
SwissprotQ2HIV91e-77BH035_ARATH; Transcription factor bHLH35
TrEMBLB9RWY61e-154B9RWY6_RICCO; DNA binding protein, putative
STRINGXP_002518255.11e-155(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-68bHLH family protein