PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30190.m011334

Common Name

LOC8258449, RCOM_1674080

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 314aa MW: 33561.6 Da PI: 9.6965

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30190.m011334	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.8	1.2e-38	25	85	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++ +kcprC+s+ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ 30190.m011334 25 QQQPQKCPRCESMNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRVK 85 57899***************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	3.4E-33	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.779	29	83	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-18	30	73	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MQQDQDILKP NQDRRIQGEN QNQPQQQPQK CPRCESMNTK FCYYNNYSLS QPRYFCKTCR 60 RYWTQGGTLR NVPVGGGCRK GKRVKTSSSS SSASSTTTTS SSSSENSRSQ SLANTTQNMI 120 TSTSVSLGLR AKESGNLVST PGASSVGTYN YSSAGGGGGF LMNSLAAIQS LSNQPTLPQS 180 FSLNHQPVNL GGDFAGGGSS LSLLHGFNAV VPSFGSQQIQ QQRQFYNMGS RDNRNTGDHP 240 FYAAASAHHQ QQTAGFITSN TNPTNVSDTA LWSVSTSTAA GNTSSSSNIV NGGSFTLNPT 300 DQWLHHLPGY GPPP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30190.m011334

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002509454.1	0.0	dof zinc finger protein DOF5.4
TrEMBL	B9RBC0	0.0	B9RBC0_RICCO; Zinc finger protein, putative
STRING	XP_002509454.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-24	Dof family protein

Link Out ? help Back to Top
Phytozome	30190.m011334
Entrez Gene	8258449