PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30190.m011160
Common NameRCOM_1685820
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 497aa    MW: 55857.6 Da    PI: 9.5018
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30190.m011160genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-124388147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +grWT+ Ed ll +av+++  ++W++Ia+ ++  +t  qc  rw  +
    30190.m011160 43 KGRWTEYEDYLLTEAVTKFNARNWRKIAESLP-QKTTSQCFTRWKRV 88
                     79******************************.9**********876 PP
2Myb_DNA-binding54.42.8e-1795141148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde +++ v+++G++ W+ +a+ ++ gR +kqc++rw+++l
    30190.m011160  95 KGTWTKEEDECIIESVRKYGPRKWSVVAKSLP-GRLGKQCRERWFNHL 141
                      799*****************************.*************97 PP
3Myb_DNA-binding48.61.8e-15148191247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT++E++ l+++++++G++ W+ Iar ++ gR ++ +k++w+ +
    30190.m011160 148 TSWTEDEELALIHYHELYGNK-WAEIARFLP-GRAENAIKNHWNCL 191
                      68*******************.*********.***********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.6783889IPR017930Myb domain
SuperFamilySSF466896.42E-144195IPR009057Homeodomain-like
SMARTSM007172.0E-104291IPR001005SANT/Myb domain
PfamPF002491.0E-104388IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-1944101IPR009057Homeodomain-like
CDDcd001673.44E-94589No hitNo description
PROSITE profilePS5129429.01790145IPR017930Myb domain
SuperFamilySSF466891.52E-2993188IPR009057Homeodomain-like
SMARTSM007177.0E-1694143IPR001005SANT/Myb domain
PfamPF002491.3E-1695141IPR001005SANT/Myb domain
CDDcd001672.77E-1497141No hitNo description
Gene3DG3DSA:1.10.10.603.1E-24102148IPR009057Homeodomain-like
SMARTSM007178.4E-15146194IPR001005SANT/Myb domain
PROSITE profilePS5129418.485146196IPR017930Myb domain
PfamPF002498.3E-14147189IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-21149195IPR009057Homeodomain-like
CDDcd001672.04E-11149192No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MTMELKKEPE QQVIDALPYS VYFGNCDAAL PRREAGPARQ STKGRWTEYE DYLLTEAVTK  60
FNARNWRKIA ESLPQKTTSQ CFTRWKRVLN PAIVKGTWTK EEDECIIESV RKYGPRKWSV  120
VAKSLPGRLG KQCRERWFNH LDPAISKTSW TEDEELALIH YHELYGNKWA EIARFLPGRA  180
ENAIKNHWNC LMKKKFDSIL PHAYAMDRCT SGSINFCSCA VKPNSMMVKE ERQIPDGTVS  240
VHGRMGLECS ANAIGRGRVT IGPKRMDCKH DIVLSSLSPS DIKLPFDGPT STRLRSRALE  300
AVLPFNSNSV KSPNGLRSYE LGIFPSEFSN KMEISYTNTS TSGIGKDSNI LGKENQVQKM  360
QRPQVDASKH CLHQQSVQLK DYANVPVSCS TPRNLVKCTS PESILRSSAR TFKNTPSIIR  420
KRAYRKTGVD NPSDVICTPS LKFSCSNSKD VNTADIPEAN QGFLSLFCKA GSSIAVKSLR  480
RQLDYAFDSE KDAASSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-58431956158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-58431956158MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30190.m011160
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002509747.20.0transcription factor MYB3R-2
TrEMBLB9RC630.0B9RC63_RICCO; Myb, putative
STRINGXP_002509747.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.19e-73Homeodomain-like protein