PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30190.m011066 | ||||||||
Common Name | RCOM_1681810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | GRF | ||||||||
Protein Properties | Length: 233aa MW: 25667.9 Da PI: 9.3517 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.9 | 5.7e-26 | 140 | 184 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++l+++k+CErH+hrgr+rsrk +e+ 30190.m011066 140 DPEPGRCRRTDGKKWRCSKEALPDQKYCERHMHRGRQRSRKLVEA 184 79***************************************9985 PP | |||||||
2 | QLQ | 38.5 | 3.5e-14 | 71 | 105 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Qlq+L Q l+yKy+ a+ PvP +L+++i+k 30190.m011066 71 FTILQLQELQLQSLIYKYIEAGCPVPYNLVLPIWK 105 7888*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 0.0019 | 69 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.299 | 70 | 105 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.5E-10 | 71 | 104 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.77 | 140 | 184 | IPR014977 | WRC domain |
Pfam | PF08879 | 6.1E-22 | 141 | 183 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEAQSPPSKI ARLADSSTEK GNYLTMERHG SGSPPIGLGL ALGRSGSIDH HQHHRPIPAT 60 GYTKSSSSCG FTILQLQELQ LQSLIYKYIE AGCPVPYNLV LPIWKSVSSS LGNLNSTLYQ 120 LYPSFMGASQ LHLEYRNGMD PEPGRCRRTD GKKWRCSKEA LPDQKYCERH MHRGRQRSRK 180 LVEAASQTKT SDTATSTNLS ISLPASSATS NVNPFPMCGF YLNTDHPGAI QNN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30190.m011066 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002509650.2 | 1e-175 | growth-regulating factor 10 | ||||
Swissprot | Q6AWX7 | 1e-42 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | B9RBW6 | 1e-173 | B9RBW6_RICCO; Uncharacterized protein | ||||
STRING | XP_002509650.1 | 1e-174 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14195 | 10 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 1e-32 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | 30190.m011066 |
Publications ? help Back to Top | |||
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