PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30180.m001019
Common NameLOC8259679, RCOM_1632080
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 315aa    MW: 33801.8 Da    PI: 6.8818
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30180.m001019genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like96.61.8e-30104157155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  30180.m001019 104 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 157
                    59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.059101160IPR017930Myb domain
SuperFamilySSF466893.05E-20101161IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-30103162IPR009057Homeodomain-like
TIGRFAMsTIGR015573.4E-24105157IPR006447Myb domain, plants
PfamPF002491.2E-7107156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MREDDSNWFS KWEEELPSPE ELMPLSQTLI TPDLAIAFDI RNPTTNQQNQ PIPPPPPPPP  60
ISTNTLSPTN PLLSSQPNSA EYAADSADLG SAGAGDEPAR TLKRPRLVWT PQLHKRFVDA  120
VAHLGIKNAV PKTIMQLMSV DGLTRENVAS HLQKYRLYLK RMQGLSSGGA AGVNGSAGGG  180
GGAAASDAAT EHLFASSPVP AHFLHPGRPN SDHFLPFVPV AALQHHHHQQ QMAAAAAAAV  240
AHPQLQSQYH RQMGHFGSPP NGQFDHPFLA RQSQQPVHRI GAPVHNTVPG YVEDLESANG  300
NGGRKVLTLF PTGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-32104160157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30180.m001019
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015573603.10.0transcription factor MYBC1
SwissprotO222102e-64MYBC1_ARATH; Transcription factor MYBC1
TrEMBLB9RU560.0B9RU56_RICCO; DNA binding protein, putative
STRINGXP_002517275.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85423045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.16e-83G2-like family protein
Publications ? help Back to Top
  1. Sardesai N,Laluk K,Mengiste T,Gelvin S
    The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium.
    Plant Signal Behav, 2018.
    [PMID:24785741]