PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30179.m000558 | ||||||||
Common Name | RCOM_1628980 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB_related | ||||||||
Protein Properties | Length: 417aa MW: 47337 Da PI: 6.7161 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 91 | 139 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd l+ +++q+G+g +W + ++++g++R++k+c++rw++yl 30179.m000558 91 KGPWSPEEDATLKAYIEQYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 139 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 82 | 142 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.435 | 86 | 143 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-12 | 90 | 141 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-15 | 91 | 139 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 9.31E-19 | 92 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.83E-9 | 93 | 139 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.9E-5 | 143 | 164 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0035987 | Biological Process | endodermal cell differentiation | ||||
GO:0045597 | Biological Process | positive regulation of cell differentiation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000021 | Biological Process | regulation of ion homeostasis | ||||
GO:2000067 | Biological Process | regulation of root morphogenesis | ||||
GO:0048226 | Cellular Component | Casparian strip | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 417 aa Download sequence Send to blast |
MRETERTLAG KRKTLEKRSW IENSERRRRE KVRYKTFCPQ KVSHHPLFLP INFGHPFLIF 60 PNNLLAQTRR ERENIEEMGR APCCDKANVK KGPWSPEEDA TLKAYIEQYG TGGNWIALPQ 120 KIGLKRCGKS CRLRWLNYLR PNIKHGGFSE EEDNIICSLY ISIGSRRKQA NINRPSSAST 180 PAESNRIEDA SSSMALSNSA LERLQLHMQL QSLQNPLSVY NNPALWPKLH PLQEKLLLQS 240 MAETSNTIMQ QLLPTPQQGH EQKLDIYEQL SGSIALENQN YPRFDNPKVD GLENSFNAIT 300 SSDSSVPFNN GNSVADSIAM EGRANGVDQS VAAIQPVSTF QAELENFLSN KTSGFVSQED 360 QITEFDCFRE MNGSKDSLVW WSNDFETKSA SSNSWDSTSV LQSEGMFQDY HELGYNM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 10 | 28 | KRKTLEKRSWIENSERRRR |
2 | 24 | 29 | ERRRRE |
3 | 25 | 30 | RRRREK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30179.m000558 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210336 | 2e-63 | AC210336.1 Populus trichocarpa clone POP029-A04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015579086.1 | 0.0 | transcription factor MYB36 | ||||
TrEMBL | B9SJP4 | 0.0 | B9SJP4_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002526213.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF130 | 34 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57620.1 | 1e-69 | myb domain protein 36 |
Link Out ? help Back to Top | |
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Phytozome | 30179.m000558 |