PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30178.m000863 | ||||||||
Common Name | LOC8259709, RCOM_1627490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | FAR1 | ||||||||
Protein Properties | Length: 212aa MW: 24245.6 Da PI: 9.1415 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 88.1 | 1.3e-27 | 47 | 136 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 kfY +YA++vGF vr+ + ++s +g++ r++ C+k+g++ +++++ + +++r++ r gCka++ vk+ek+gkw+vt++e++HnH+l+ 30178.m000863 47 KFYVDYARRVGFVVRIMQRRRSGIDGKTLARRLGCNKQGFSPNHRNAMRPDKKPRSSAREGCKATILVKMEKSGKWVVTRFEKDHNHPLV 136 6**********************************************9****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-25 | 47 | 136 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MTVDLDKEVG AVDSSLGVGE RIESVQGDGI LEPYVGMEFD SEDDARKFYV DYARRVGFVV 60 RIMQRRRSGI DGKTLARRLG CNKQGFSPNH RNAMRPDKKP RSSAREGCKA TILVKMEKSG 120 KWVVTRFEKD HNHPLVITAN GFSTVGDKDK KIEELSRELE HQEQLCAVYR ERLLTFMNDV 180 AEQTEELSSK IQVIVDNVRK VESEVKKFSH RR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30178.m000863 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015579699.1 | 1e-156 | protein FAR1-RELATED SEQUENCE 5 isoform X1 | ||||
Swissprot | Q9SZL8 | 5e-24 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | B9SMQ1 | 1e-155 | B9SMQ1_RICCO; Uncharacterized protein | ||||
STRING | XP_002527270.1 | 1e-155 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 3e-74 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | 30178.m000863 |
Entrez Gene | 8259709 |
Publications ? help Back to Top | |||
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