PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30174.m009047 | ||||||||
Common Name | RCOM_1619100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | DBB | ||||||||
Protein Properties | Length: 177aa MW: 19603.6 Da PI: 3.8541 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.6 | 5.2e-08 | 8 | 49 | 3 | 38 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 + C+ ++ + +l+C++++ +lC++C + +H H+ 30174.m009047 8 GDSCDSCHTAPCTLYCHTDSAYLCQNCDEFIHATnplalqHD 49 678*****************************6567777776 PP | |||||||
2 | zf-B_box | 30.3 | 8.6e-10 | 50 | 96 | 2 | 42 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 + ++C +e+ ++++ C+ + lC +C +e+H H++vp+ 30174.m009047 50 RVWICIACENAPATFTCQADAANLCINCDTEIHLAnplpcrHNRVPI 96 5789*****************************66789999999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.769 | 6 | 53 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.2E-8 | 6 | 53 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 3.6E-6 | 8 | 50 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.90E-8 | 9 | 53 | No hit | No description |
PROSITE profile | PS50119 | 9.926 | 49 | 96 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.7E-7 | 51 | 96 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.15E-5 | 52 | 96 | No hit | No description |
SMART | SM00336 | 1.8E-5 | 54 | 96 | IPR000315 | B-box-type zinc finger |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 177 aa Download sequence Send to blast |
MLKGNPQGDS CDSCHTAPCT LYCHTDSAYL CQNCDEFIHA TNPLALQHDR VWICIACENA 60 PATFTCQADA ANLCINCDTE IHLANPLPCR HNRVPISPPP GIVPTSSTTY LDKSQVPLRD 120 TENEAMANKS IEELEQDEAD SWLLLDLDNN DDQSDSGFPY SEDVDEYLDL IELNSII |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30174.m009047 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015366.1 | 1e-130 | LOW QUALITY PROTEIN: zinc finger protein CONSTANS-LIKE 1 | ||||
TrEMBL | B9RE80 | 1e-127 | B9RE80_RICCO; Zinc finger protein, putative | ||||
STRING | XP_002512019.1 | 1e-127 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3827 | 33 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15840.2 | 1e-40 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | 30174.m009047 |