PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m009027
Common NameLOC8261876, RCOM_1615220
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family BES1
Protein Properties Length: 704aa    MW: 78914.2 Da    PI: 6.1126
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m009027genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822143.22.3e-44802202135
         DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssasaspe 91 
                     ++r+++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +gs+p    ++a+++ ss+ +sp+
  30174.m009027  80 VTRRSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAggtSAAATTSSSHLVSPQ 175
                    5799****************************************************************9888899999953444444445558999 PP

         DUF822  92 sslq.sslkssalaspvesysaspksssfpspssldsislasaas 135
                    +++  ++ +s   ++ ve   +++k + +p ps +d  +++++ +
  30174.m009027 176 TPSAsLKGVSPGYRTSVEYNPCRLKGVFVPTPSAYDLSTSTQSPT 220
                    98887888999*************************987764433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.0E-3982217IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.85E-179263700IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.807.3E-199266699IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.1E-103270690IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-71301315IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-71322340IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-71344365IPR001554Glycoside hydrolase, family 14
PROSITE patternPS005060348356IPR018238Glycoside hydrolase, family 14, conserved site
PRINTSPR008424.3E-9427436IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007506.1E-71437459IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-71510529IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-71544560IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-71561572IPR001554Glycoside hydrolase, family 14
PRINTSPR007506.1E-71579602IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.3E-9582592IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007506.1E-71619641IPR001554Glycoside hydrolase, family 14
PRINTSPR008424.3E-9670684IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008424.3E-9685699IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 704 aa     Download sequence    Send to blast
MVVMATDMHK LIGTSEEDDE EEMDMDVKEE DDDVQNREKH ITMQVMAGID GGMVSNSGND  60
QFLHQQHIQE QVSTPGGGGV TRRSRPLEEK ERTKLRERHR RAITARILAG LRRHGNYNLR  120
VRADINDVIA ALAREAGWVV LPDGTTFPSR SQGSRPAGGT SAAATTSSSH LVSPQTPSAS  180
LKGVSPGYRT SVEYNPCRLK GVFVPTPSAY DLSTSTQSPT SVMITDGGEQ SENHHLIGGS  240
LDAISEKQMT AIPPKLSERD FAGTAFVPVY VMLPLGVINM KCELADPDGL LKQLRVLKSS  300
NVDGVIVDCW WGIVEAHAPQ EYNWNGYKRL FQMVRELKLK LKVVMSFHEC GGNVGDDVCI  360
PLPHWVAEIG RSNPDIFFTD REGRRNPECL TWGIDKERVL RGRTALEVYF DYMRSFRVEF  420
DEFFEEGLIS MVEVGLGPCG ELRYPSCPVK HGWRYPGIGE FQCYDQYLLK SLRKTAEARG  480
HPFWARGPEN AGSYNAQPHE TGFFHDGGDY DGYYGRFFLN WYSRVLVEHG DRVLSLAKLA  540
FEGTQIAAKL SGIHWWYKTA SHAAELTAGF YNSCNRDGYN AIAMMLKKHG AALNFSCSEA  600
RMLDQPGDFV EALGDPDGLL WQVLNAAWDV DTLIASENVL PCHDRVGYNK ILDNAKPLNN  660
PDGRHFLSFT YLRLSPLLME RQNFMEFERF VKRMHGEAVI DLQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdr_A1e-16026669711444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m009027
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511857.10.0beta-amylase 7
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLB9RDR80.0B9RDR8_RICCO; Beta-amylase
STRINGXP_002511857.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]