PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30174.m008828

Common Name

RCOM_1610560

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

GRAS

Protein Properties

Length: 733aa MW: 80414.8 Da PI: 6.059

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30174.m008828	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	319.6	6.5e-98	377	732	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 + ++Ae +++g+ +laq +Larl+++ + + g+p +R+a+yf+eAL+ l+ ++ +ps+ s+ n + ++ a+k fse+sPil+fs++t+ 30174.m008828 377 PICQAAELIETGNPALAQGILARLNHQlSLSIGKPHTRAAFYFKEALQLLLHM-----NNTANPSSLSPCNLILKIGAYKSFSEISPILQFSNFTC 467 5789********************9455667************9997.....8888999999999********************* PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee. 193 Nqa+lea eg++r+Hi+Dfdi+ G+QW++L+q+La R++g sl+iT+++sp+ +++ el t+e+L+ fA e+++pfe ++l ++l++ + ++ 30174.m008828 468 NQALLEACEGSDRIHIVDFDIGFGGQWASLMQELALRNGGVSSLKITAFVSPS-HDEIELGFTQENLRVFAGEINMPFELEILGLDALNSGSWSMp 562 ***********************************************76.7999********************98888888776655 PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289 +r++ +E++aVnl ++ ++ + + s + vL++vk+lsPk+vv ++ +d+++ +F++++ ++++ ys l++slea + ++ +k+Er+l 30174.m008828 563 IRISDKEVIAVNLPIAPFSNY--PSS----LPVVLRFVKQLSPKIVVSLDRGCDRTDLPFAHHINHSIQSYSGLLESLEAV-NMNIDALQKIERFL 651 89999******888887..444....456*****************************************776.4567999*** PP GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++i+++v ++ + + W++ + ++GF+p ++s++a++qa++l+++++++g++ve+++ +lvl+W++++L+s+SaWr 30174.m008828 652 VQPAIEKIVLSRHGH----PDRTTPWKSLFLQSGFTPFQFSNFAESQAECLVQRTPVRGFHVEKRQSTLVLCWQRKELISASAWR 732 ******99998....88889**********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.422	348	712	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.2E-95	377	732	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0048768	Biological Process	root hair cell tip growth
GO:0051301	Biological Process	cell division

Sequence ? help Back to Top
Protein Sequence Length: 733 aa Download sequence Send to blast
MPLAFEDFQG KGVLDFSSSS TSSPDSLHQL LLPPQSQHRQ QKWQNSNPKE ICCYVGSEPT 60 SVLDARRSPS PPTSSSTLSS SQGGSNSAAG GGGRGTSIET TTTTGVAAAA VSGNLSVDTS 120 TEKCGQQQLG MEDWEGVLPG SPSQEQEQEQ SILRLIMGDI EDPSLGLNKL LQDGSGSHDT 180 EFNAGFGVVD QGFGFEPMNG ANLVNSIDPI SSAFPLLSHN ARIGSVLNQT QDPNPATTST 240 GNNLLSGMFQ HQPAIEAREE KPQIFNPQVI INQNQAHFSQ NQAMFLPLSY AQLQEHHHLL 300 SPPPPKRLNS GPVGANNFQV QKLPFPDSRP ELFLQRQQQQ QHQLQMLQQQ QRPAIMKQKI 360 MTDELAAQQL QQAIINPICQ AAELIETGNP ALAQGILARL NHQLSLSIGK PHTRAAFYFK 420 EALQLLLHMN NTANPSSLSP CNLILKIGAY KSFSEISPIL QFSNFTCNQA LLEACEGSDR 480 IHIVDFDIGF GGQWASLMQE LALRNGGVSS LKITAFVSPS HDEIELGFTQ ENLRVFAGEI 540 NMPFELEILG LDALNSGSWS MPIRISDKEV IAVNLPIAPF SNYPSSLPVV LRFVKQLSPK 600 IVVSLDRGCD RTDLPFAHHI NHSIQSYSGL LESLEAVNMN IDALQKIERF LVQPAIEKIV 660 LSRHGHPDRT TPWKSLFLQS GFTPFQFSNF AESQAECLVQ RTPVRGFHVE KRQSTLVLCW 720 QRKELISASA WRC

Sequence ? help Back to Top

Protein Sequence Length: 733 aa Download sequence Send to blast

MPLAFEDFQG KGVLDFSSSS TSSPDSLHQL LLPPQSQHRQ QKWQNSNPKE ICCYVGSEPT  60
SVLDARRSPS PPTSSSTLSS SQGGSNSAAG GGGRGTSIET TTTTGVAAAA VSGNLSVDTS  120
TEKCGQQQLG MEDWEGVLPG SPSQEQEQEQ SILRLIMGDI EDPSLGLNKL LQDGSGSHDT  180
EFNAGFGVVD QGFGFEPMNG ANLVNSIDPI SSAFPLLSHN ARIGSVLNQT QDPNPATTST  240
GNNLLSGMFQ HQPAIEAREE KPQIFNPQVI INQNQAHFSQ NQAMFLPLSY AQLQEHHHLL  300
SPPPPKRLNS GPVGANNFQV QKLPFPDSRP ELFLQRQQQQ QHQLQMLQQQ QRPAIMKQKI  360
MTDELAAQQL QQAIINPICQ AAELIETGNP ALAQGILARL NHQLSLSIGK PHTRAAFYFK  420
EALQLLLHMN NTANPSSLSP CNLILKIGAY KSFSEISPIL QFSNFTCNQA LLEACEGSDR  480
IHIVDFDIGF GGQWASLMQE LALRNGGVSS LKITAFVSPS HDEIELGFTQ ENLRVFAGEI  540
NMPFELEILG LDALNSGSWS MPIRISDKEV IAVNLPIAPF SNYPSSLPVV LRFVKQLSPK  600
IVVSLDRGCD RTDLPFAHHI NHSIQSYSGL LESLEAVNMN IDALQKIERF LVQPAIEKIV  660
LSRHGHPDRT TPWKSLFLQS GFTPFQFSNF AESQAECLVQ RTPVRGFHVE KRQSTLVLCW  720
QRKELISASA WRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-32	389	732	18	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30174.m008828

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002511661.2	0.0	scarecrow-like protein 6
TrEMBL	B9RD72	0.0	B9RD72_RICCO; Uncharacterized protein
STRING	XP_002511661.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3183	31	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-143	GRAS family protein

Link Out ? help Back to Top
Phytozome	30174.m008828