PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008721
Common NameRCOM_1617860
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family TCP
Protein Properties Length: 315aa    MW: 35738.2 Da    PI: 9.6937
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008721genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.24.9e-41401933133
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssaseceaesssssasns 85 
                     k+drhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl q+ pai +l +t             s+ss sece++s   +a+  
  30174.m008721  40 SKRDRHSKIDTAQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLIQSRPAIRKLFSTglpsyscsvgvakSASSTSECEDVSGIDEAAVA 135
                    69*************************************************************999999999888766666788666665555533 PP

            TCP  86 ssg...........kaaksaakskksqksaasalnlakesrakarararertrekmrik 133
                    +++            ++ +++k+ k+++++ +++ lakesr+kararar+rt+ek+r++
  30174.m008721 136 NIEgsknskgkkpsLSCVNKKKRPKASRKT-AFHPLAKESREKARARARQRTEEKKRTR 193
                    333455556777665555555444444444.48**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.2E-4440192IPR005333Transcription factor, TCP
PROSITE profilePS5136931.2064199IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.856172189IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MANSKRINDA DNELTKICNR ESHHSTTCNQ QHVFPRKRSS KRDRHSKIDT AQGPRDRRMR  60
LSLKVAREFF DLQDKLCFDK ASKTVEWLLI QSRPAIRKLF STGLPSYSCS VGVAKSASST  120
SECEDVSGID EAAVANIEGS KNSKGKKPSL SCVNKKKRPK ASRKTAFHPL AKESREKARA  180
RARQRTEEKK RTRRIIDVPN LCQEAKDQEL NQLRTWSPFE TTGEESGTQS HTMNNNPSME  240
MLAEIEEAPI SSHVQQQDQL VTTEGMIDDS LVIMGKWSPS FIINHLFNTS IPQETNHQIT  300
DLQSFCKSWE VAYNS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008721
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511978.20.0uncharacterized protein LOC8286744 isoform X2
TrEMBLB9RE390.0B9RE39_RICCO; Uncharacterized protein
STRINGXP_002511978.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.12e-19TCP family protein