PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30174.m008698
Common NameRCOM_1617330
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 401aa    MW: 43078.9 Da    PI: 9.0973
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30174.m008698genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_164.12.5e-20256318163
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    e+elkrerrkq+NRe+ArrsR+RK+ae+eeL  kv++L++eN aLk+e+ +++++++kl+ e+
  30174.m008698 256 ERELKRERRKQSNRESARRSRLRKQAETEELSHKVESLTSENLALKSEIHQMSEKSEKLRLEN 318
                    89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.9E-36396IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.0E-19129239No hitNo description
Gene3DG3DSA:1.20.5.1706.4E-18250315No hitNo description
PfamPF001703.3E-19256318IPR004827Basic-leucine zipper domain
SMARTSM003381.9E-19256320IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093258321IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.19E-10259314No hitNo description
CDDcd147027.88E-20261310No hitNo description
PROSITE patternPS000360263278IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MKMGNNEEGK SAKRDKSSSP APPDQANIHV YPDWAAMQAY YGPRMALPPY YNSAMASGHA  60
PHPYMWGPPQ PMMPPYGTPY AAVYSHGGVY AHPAVPIGSQ PPGHGVPASP AAVTPLNVET  120
PTKSTGNADR GLIKKLKGFD GLAMSIGNGH SKVESAEGGE RRLSQSSETE GSTNGSDGNT  180
TAGKKRSREG TPTIGGEIRT ETRVNSLPTG EAKSVGSVIS PSMSTALELR NSPVSAAKTN  240
VQPCPVLPPE TWIQNERELK RERRKQSNRE SARRSRLRKQ AETEELSHKV ESLTSENLAL  300
KSEIHQMSEK SEKLRLENAA LLEKLKNAEL GHSQDIMLNN SDEPRGSAVS TENLLSRVDN  360
SASVERKTAE DGDIYERTSN SGAKLHQLLS TSPRADAVAA G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272278RRSRLRK
2272279RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30174.m008698
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012083267.10.0common plant regulatory factor 1 isoform X1
SwissprotQ990891e-148CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLB9RE160.0B9RE16_RICCO; Common plant regulatory factor CPRF-1, putative
STRINGXP_002511955.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53013455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-107G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]