PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30174.m008669 | ||||||||
Common Name | RCOM_1616720 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21848.1 Da PI: 8.8163 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 81.3 | 9.7e-26 | 117 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +p rCt+++C vkk+v+r ++d+++v++tYeg Hnh+ 30174.m008669 117 LDDGYRWRKYGQKAVKNSSYP----RCTHHTCIVKKQVQRLSKDTSIVVTTYEGIHNHP 171 59****************877....6********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-26 | 104 | 171 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.76E-23 | 110 | 172 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.055 | 112 | 173 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-30 | 117 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.5E-19 | 118 | 171 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEGQETPQPP LLVHELPPQN SPYLFTPPHP LLPSSSLHPP VIDPQVVLPD IDWVALLSSQ 60 SVVGENRPMM MENASLIGET GAEEEKGNKD KLRKSGRIKK HITPRFAFQT RSADDILDDG 120 YRWRKYGQKA VKNSSYPRCT HHTCIVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLT 180 PLLKQMQFLT RF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-19 | 107 | 170 | 7 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-19 | 107 | 170 | 7 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00317 | DAP | Transfer from AT2G46130 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30174.m008669 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT827600 | 3e-60 | KT827600.1 Manihot esculenta WRKY transcription factor 25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025015844.1 | 1e-142 | probable WRKY transcription factor 43 isoform X2 | ||||
Swissprot | Q8GY11 | 9e-49 | WRK43_ARATH; Probable WRKY transcription factor 43 | ||||
TrEMBL | B9RDY7 | 1e-141 | B9RDY7_RICCO; WRKY transcription factor, putative | ||||
STRING | XP_002511926.1 | 1e-142 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3227 | 34 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46130.2 | 7e-52 | WRKY DNA-binding protein 43 |
Link Out ? help Back to Top | |
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Phytozome | 30174.m008669 |
Publications ? help Back to Top | |||
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