PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30170.m014389 | ||||||||
Common Name | LOC8273628, RCOM_1601580 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | WOX | ||||||||
Protein Properties | Length: 231aa MW: 26493.9 Da PI: 5.177 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.3 | 3.6e-20 | 80 | 140 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eqle+Le+ F + + +p +++++e+A++l ++e++V++WFqNrRa+ k+ 30170.m014389 80 RQRWAPKAEQLEILESIFTQsKATPGRQRIKEIATQLslhgPISETNVYNWFQNRRARSKR 140 89*****************989***************999889****************97 PP | |||||||
2 | Wus_type_Homeobox | 90.2 | 2e-29 | 79 | 142 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P++eQ++iLe+++++ tP +++i++i+++L+ +G i+++NV++WFQNr+aR+++kq 30170.m014389 79 SRQRWAPKAEQLEILESIFTQSKATPGRQRIKEIATQLSLHGPISETNVYNWFQNRRARSKRKQ 142 689***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 14.511 | 76 | 141 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-17 | 78 | 144 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.1E-15 | 78 | 145 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-15 | 78 | 143 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-17 | 80 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.56E-13 | 80 | 142 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MEEGQYQKEL LFGSGLGVKV MTDDQMETLR KQISVYATIC ESLVQMHKAI SDQNDFSGMR 60 LQNPYAGPFF SYTLNKIPSR QRWAPKAEQL EILESIFTQS KATPGRQRIK EIATQLSLHG 120 PISETNVYNW FQNRRARSKR KQSALAPSPP PPPPNNRESQ VEVEPEPEPE PELELETAKE 180 KRTQLDDNLA FMVNHMYFHT PEIGGIDQLI GKAEVPMSYD SYWQVDQHDL L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30170.m014389 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM150789 | 0.0 | HM150789.1 Ricinus communis microsatellite RC-232 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002510692.1 | 1e-173 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 5e-52 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | B9R8P9 | 1e-172 | B9R8P9_RICCO; DNA binding protein, putative | ||||
STRING | XP_002510692.1 | 1e-173 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 3e-50 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | 30170.m014389 |
Entrez Gene | 8273628 |
Publications ? help Back to Top | |||
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