PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014365
Common NameRCOM_1601140
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Nin-like
Protein Properties Length: 949aa    MW: 105490 Da    PI: 5.7822
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014365genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.82.6e-29613664152
         RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                    aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++
  30170.m014365 613 AEKTITLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGINRWPSRKIKKV 664
                    589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.473603684IPR003035RWP-RK domain
PfamPF020423.2E-25616664IPR003035RWP-RK domain
SuperFamilySSF542773.36E-20832905No hitNo description
PROSITE profilePS5174523.709837913IPR000270PB1 domain
SMARTSM006669.5E-21837919IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2402.5E-20838908No hitNo description
CDDcd064071.53E-34839906No hitNo description
PfamPF005641.6E-15839908IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MEEGVFSPGT MLGTRVDSAM DFDYMDKLLL EGCWLETIDG SEFFNPSPSS SAAFIDSFLW  60
PIPEVNNDDL ASTPSQKSNP EEEQIALPHR NSLLNETQDG SPLNTEAIGQ DMGSVVTLGN  120
NAAEASEVSR RWWIGPSAIP GPKTSVRDRL ITALSYIKDF TKDKDVLIQI WVPVNSGGRR  180
FLVTHDQHFA VVPNCERLAN YRDISINYHF SADENSKDMV GLPGRVFLGK VPEWTPDVRF  240
FRSDEYPRVD HAQQYGVRGT LALPVFEQGS RTCLGVIEVV TTAHKIIYHP ELESVCRALE  300
AVDLQSSGIP GMQNVKVCDM SYQSVLPEIH ELLRSACETH QLPLAQTWVP CIQQGKGGCR  360
HSDENYIRCV STVDRACYVR DTSIQVFHEA CSEHHLLKGQ GVAGEAFLTN QPCFTSDITS  420
YAKTEYPLSH HARMFGLRAA VAIRLRSVHT GTADFVLEFF LPVDCTDPDK QKKMLTSLSI  480
IIQQVCRSLR VVTDKELEEE NYFLVSEVVD PSDGRLTRDE MLRVGHMYSE SYAGDISWTS  540
CLTVARQSGN DGSLCQIEKQ KVPMGEKFMQ HKKNQEDNSL KRNIECGGDS SVAEGSFSSV  600
CMGKTAEKRR TKAEKTITLQ VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGINRWPSRK  660
IKKVGHSLQK LQLVIDSVQG ASGSLQIGSF YTNFPELVSP KLSRSSQFST SKQSEHPEPS  720
SIQPEEGIFS SQAAAPKSPS PSSSCSQSSS SSHCVSSGTQ KTPSSCTVPT SEDPMLGEGN  780
AILKRVRSDA ELHASSQAEQ NLLPRSQSHK SLREQPNLGY LPPLPKTSSC ASQEIDAQRV  840
KVTYGNENIR FRMPSSWGLT DLLGEIARRF NIDDINRYDL KYLDDDSEWV LLTCDDDLEE  900
CLDIVKQWHF MTSVACFELC RRSRLEVAVF SDSFEVSIES AGQTAELVK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014365
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015575768.10.0protein NLP4
RefseqXP_015575774.10.0protein NLP4
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLB9R8N50.0B9R8N5_RICCO; Uncharacterized protein
STRINGXP_002510678.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12373399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein