PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30170.m014243 | ||||||||
Common Name | LOC8269953, RCOM_1602280 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 306aa MW: 33780 Da PI: 4.4226 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 26.4 | 1.5e-08 | 145 | 187 | 4 | 46 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 +k+ rr +NR AA rsR+RKk ++ Le k+ Le+e ++L 30170.m014243 145 SKKRRRQLRNRDAAVRSRERKKIYVRDLEIKSRYLEGECRRLG 187 6999*********************************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 9.6E-11 | 140 | 201 | No hit | No description |
SMART | SM00338 | 7.7E-6 | 142 | 206 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.726 | 144 | 201 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.88E-10 | 146 | 201 | No hit | No description |
Pfam | PF00170 | 1.2E-6 | 146 | 188 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14704 | 3.67E-17 | 147 | 198 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 149 | 164 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030968 | Biological Process | endoplasmic reticulum unfolded protein response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MEDTDDILES VNFDSLGQID WDNLFDDNSP LLVTESSSSP ENFSDSSPDS VSLWIDQVEN 60 MLMKDDDVLA SAEPSQHFSE GFLADLLVDS PADGSVDLST DKDSIVSPDN GFGGASETEK 120 EGEKILSNNE AKVDNDSEDP DDPVSKKRRR QLRNRDAAVR SRERKKIYVR DLEIKSRYLE 180 GECRRLGRLL QCFVAENQAL RLGLQKGNAF GVTLAKQESA VLLLESLLLG SLLWFLGIMC 240 LFTLSAMSQL TLVAVPLENV GKKVPERGAG SKMFTSLANQ SFVNSRKCKA SRTRMKAESV 300 FIGVLV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 165 | KRRRQLRNRDAAVRSRERKK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00019 | PBM | Transfer from AT1G42990 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30170.m014243 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF022006 | 1e-124 | KF022006.1 Jatropha curcas basic leucine zipper 60 (bZIP60) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002510740.1 | 0.0 | bZIP transcription factor 60 | ||||
TrEMBL | B9R8U7 | 0.0 | B9R8U7_RICCO; Uncharacterized protein | ||||
STRING | XP_002510740.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12009 | 30 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G42990.1 | 9e-24 | basic region/leucine zipper motif 60 |
Link Out ? help Back to Top | |
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Phytozome | 30170.m014243 |
Entrez Gene | 8269953 |