PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014218
Common NameRCOM_1592580
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 285aa    MW: 32650.1 Da    PI: 10.1218
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014218genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.85.5e-1529981689
                   EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89
                     lp  f+++++g+  +s +  +  +s r+W +k+   k+ ++  ++++GW++Fvk +gL+ gDfvvF+++g+  
  30170.m014218 29 QPLPVAFCRQIKGE--GS-DRAVVKSSDREWHIKV--GKCCDGsLYFEEGWEDFVKHHGLNLGDFVVFEYNGDLV 98
                   579******99766..44.45556779********..7766666*************************998644 PP
2B345.11.7e-141932721790
                    E--HHH.HTT---..--SEEEEEETTS-EEEEEE........EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE CS
             B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy......rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sef 90 
                     +p +fa++ +++ ++   ++l+d+sg+ W vkl+        k  +r+ ++kGW +F  an+Lk gD+++F+ld  r ++ 
  30170.m014218 193 HIPVEFAKSQKLDRAS--IVILRDSSGKLWPVKLCTsdfkfrGKMLKRTAMRKGWLHFYVANKLKKGDVCLFELDlTRkKSY 272
                    69********999555..8***************878876644444559999*********************984332433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100173.90E-125105No hitNo description
SMARTSM010193.6E-415107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.3E-1818109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-1718109IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-123096IPR003340B3 DNA binding domain
PROSITE profilePS5086311.98431107IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-20155281IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0073186284IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-15191281IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-12193270IPR003340B3 DNA binding domain
PROSITE profilePS5086311.124194282IPR003340B3 DNA binding domain
CDDcd100171.25E-12194282No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MAESRRFFRV MMPGFRSKLV RGQYVSCKQP LPVAFCRQIK GEGSDRAVVK SSDREWHIKV  60
GKCCDGSLYF EEGWEDFVKH HGLNLGDFVV FEYNGDLVFD AIVFDSSACE KEIPVSINLF  120
SEKMKNKNKN KNKKKKKKKK ILSDEGKSPL EDAKSYPTNG PHFITTINAS NGPDGISYLP  180
DRKEFSCACK LQHIPVEFAK SQKLDRASIV ILRDSSGKLW PVKLCTSDFK FRGKMLKRTA  240
MRKGWLHFYV ANKLKKGDVC LFELDLTRKK SYTLVMDVHI FPLVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133139KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014218
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025013280.10.0putative B3 domain-containing protein Os03g0621600 isoform X2
TrEMBLB9R7J70.0B9R7J7_RICCO; Uncharacterized protein
STRINGXP_002510290.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.19e-18B3 family protein