PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014146
Common NameLOC8275830, RCOM_1596670
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bZIP
Protein Properties Length: 481aa    MW: 52558.7 Da    PI: 7.0235
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014146genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.81.7e-11347405563
                    CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                    kr++r   NR++A rs +RK  +i eLe+kv++L++e ++L  ++  l+  + +l+s++
  30170.m014146 347 KRAKRILANRLSAARSKERKTRYILELEQKVQTLQTEATTLSTQVTVLQRDSTALTSQN 405
                    9************************************************9999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-18343407IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.024345408IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.0E-9347404No hitNo description
SuperFamilySSF579594.15E-11347403No hitNo description
PfamPF001704.4E-10347405IPR004827Basic-leucine zipper domain
CDDcd147034.96E-20348399No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MENGNGESGG MQILRTFSTF GVSSQMGSSN MRQSFNPDNS NSNKRIGVPP SHPNNLQVIM  60
ASRSNSHNLN RGAFSHSRSL SQSAVFSFDC LPPLSPLPCL SSGSNQSDPV LTDISIEDKG  120
LSAPSPVTAT SGLKVNNDSL PPRRGHRRSM SDSVPLAFSA MIQASPQLIP IGKNSGIEKQ  180
SALVKHELDG DGNVQGKSQG EVVDDLFSAY MNLDSIDTLN SSGTEDKDLD SRASGTKTNG  240
TESSDNEVES RVKDGLKRSA GGDIARAPRH SRSLSMDSYI GNLQFDDESL KFPALGLQGG  300
QQSPRNSIDG KLANFNLEFG NSEFTEAELK KIMANEKLTE IAMADPKRAK RILANRLSAA  360
RSKERKTRYI LELEQKVQTL QTEATTLSTQ VTVLQRDSTA LTSQNNELKF CLQAMEQQAK  420
LKDALNEALV AEVQRLRLAA AELRGDIHQQ LPINQQMLKL QLQQRTHLNT HQIEQEEQKQ  480
L
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014146
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510493.10.0transcription factor RF2a
TrEMBLB9R8500.0B9R850_RICCO; DNA binding protein, putative
STRINGXP_002510493.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22723484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.31e-115bZIP family protein