PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30170.m014124

Common Name

LOC8275808, RCOM_1596220

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

SRS

Protein Properties

Length: 311aa MW: 34744.2 Da PI: 8.1464

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30170.m014124	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	225.2	1.3e-69	89	245	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..........aeaaskrkrelkskkqsalsst 89 g+++CqdCGnqakkdCah RCRtCCksrgf C+thvkstWvpaakrrerqqql+a+++++++++ + +++kr+re+ + +l++t 30170.m014124 89 GGMNCQDCGNQAKKDCAHLRCRTCCKSRGFLCQTHVKSTWVPAAKRRERQQQLSALQQQQQQHQhqqnqeqnqfRGENPKRQREN-QGGVPSLACT 183 789*************************************************9999888877454444333222233333332.3334455555 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 + a++++ le+s++P+ev+s+avfrcvrvs ++d +e++aYqtav+igGhvfkGiLydqG++ 30170.m014124 184 R--LATTTSGLEVSHFPPEVNSPAVFRCVRVSPMEDTDEQYAYQTAVNIGGHVFKGILYDQGVD 245 5..5555677999***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.0E-67	90	245	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.0E-26	92	134	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	8.2E-27	196	244	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048467	Biological Process	gynoecium development

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAGWFYLSKQ EEEKDQENNN NNLFLYRSSN EQEIYNNNNK GFEIWPQYYH QQQNMNSYSS 60 FGVGPSRRSF SDESSRSGFT VMRQSGLGGG MNCQDCGNQA KKDCAHLRCR TCCKSRGFLC 120 QTHVKSTWVP AAKRRERQQQ LSALQQQQQQ HQHQQNQEQN QFRGENPKRQ RENQGGVPSL 180 ACTRLATTTS GLEVSHFPPE VNSPAVFRCV RVSPMEDTDE QYAYQTAVNI GGHVFKGILY 240 DQGVDVRYTS GGESSSGGAQ QLNLITAAAT TATLTATANP THPGALLDPS LYPASFNAYI 300 AGTQFFPPPR S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30170.m014124

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP011966	1e-149	AP011966.1 Jatropha curcas DNA, clone: JHL18I08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002510471.1	0.0	protein SHI RELATED SEQUENCE 5 isoform X1
Swissprot	Q9LQZ5	2e-92	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	B9R828	0.0	B9R828_RICCO; Transcription factor, putative
STRING	XP_002510471.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	1e-78	SHI-related sequence 5

Link Out ? help Back to Top
Phytozome	30170.m014124
Entrez Gene	8275808

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]