PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m014054
Common NameLOC8288941, RCOM_1594480
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ZF-HD
Protein Properties Length: 289aa    MW: 32677.3 Da    PI: 8.1784
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m014054genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.71.1e-3170127260
    ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                    ++vrY+eCl+NhAas+Gg+++DGCgEfmp  geeg+ +alkCaAC+CHRnFHR+ev+ e
  30170.m014054  70 THVRYRECLRNHAASVGGNVFDGCGEFMPG-GEEGSLEALKCAACECHRNFHRKEVDGE 127
                    579**************************9.999*********************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257743.0E-2272125IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.8E-2972124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-2873124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.75174123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.79E-18204275IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.3E-30214276IPR009057Homeodomain-like
TIGRFAMsTIGR015655.5E-29215272IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MELRGQENDT RTSVPSSYSH QSSGVERRNH NGNTTTVLTY TQTLDHHRQA RSPNPDRFPI  60
ISKGSNSKTT HVRYRECLRN HAASVGGNVF DGCGEFMPGG EEGSLEALKC AACECHRNFH  120
RKEVDGETQF SPSSRRSPMV HSLQLPPPLP SPTVLHHQQR YSVGLHSTSP TTPNMVQPMT  180
VAFGGGGTES SSEDLNAFHS NADGVPPPPP YVLSKKRFRT KFTHDQKDKM MEFAEKVGWR  240
INKQDEEEVD KFCAEIGVRR QVFKVWMHNN KNLKKQQQQQ EQEQEQEPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242162721874ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m014054
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510399.10.0zinc-finger homeodomain protein 5
SwissprotQ9FRL54e-66ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLB9R7V60.0B9R7V6_RICCO; Transcription factor, putative
STRINGXP_002510399.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.15e-66homeobox protein 33