PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013943
Common NameRCOM_1592590
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family B3
Protein Properties Length: 567aa    MW: 63821.7 Da    PI: 8.6438
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013943genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-1718108199
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    ff ++  s++l+s+rl++p +f+++ +g + +   ++l+ +sg+ W+v+l   ++s+ +++  GW  Fvk++ +  gD ++F++dg+ +f  +v+v
  30170.m013943  18 FFEIF--SSNLSSDRLRIPARFTRHLEGRTSG--SVSLTGPSGNIWTVNL--IQQSEDIFFDHGWPVFVKDHFIACGDLLLFRFDGELCF--TVQV 105
                    56666..9***************888988655..6***************..9*******************************999999..9999 PP

                    E-S CS
             B3  97 frk 99 
                    f++
  30170.m013943 106 FDQ 108
                    987 PP
2B343.65.3e-142553331394
                    TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
             B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                    s  l +p +f ++h      ++++++l++ +g  W+v+    ++   ++++ +GW  Fv++n++k gD+++F+l+++   el+v
  30170.m013943 255 SYTLNIPYQFSTAHlP---SSKTEIVLRTIKGACWTVNSVPtTRVHTSHTFCGGWMAFVRSNDIKIGDVCIFELVRK--YELRV 333
                    55799******99942...34568**************954566666799999********************9874..33344 PP
3B353.25.4e-174755551396
                    TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
             B3  13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                    s  l +p +f ++h  +     +++++l++++g++W+v+   + k+++ +++ +GW  Fv++n++kegD+++F+l+ + + e++v++
  30170.m013943 475 SYTLKIPHQFSAAHlpN----YKTEIILRNSHGERWTVNSVPDSKGRTvHTFCGGWMAFVRDNDVKEGDICMFELVTE-C-EMLVHI 555
                    45699******999533....3468***************6655554469999*********************9863.3.346665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-2112111IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.4E-2112111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.78916109IPR003340B3 DNA binding domain
CDDcd100172.00E-1616107No hitNo description
SMARTSM010198.1E-1318109IPR003340B3 DNA binding domain
PfamPF023621.8E-1518108IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-21238337IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-22239338IPR015300DNA-binding pseudobarrel domain
CDDcd100172.77E-17241337No hitNo description
SMARTSM010193.2E-10243339IPR003340B3 DNA binding domain
PROSITE profilePS5086313.183243339IPR003340B3 DNA binding domain
PfamPF023623.8E-11247333IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-23455556IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.24E-23456557IPR015300DNA-binding pseudobarrel domain
CDDcd100171.96E-20461555No hitNo description
PROSITE profilePS5086313.563463559IPR003340B3 DNA binding domain
SMARTSM010191.8E-13463559IPR003340B3 DNA binding domain
PfamPF023623.1E-14472555IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MAKEENEEEL INARRPCFFE IFSSNLSSDR LRIPARFTRH LEGRTSGSVS LTGPSGNIWT  60
VNLIQQSEDI FFDHGWPVFV KDHFIACGDL LLFRFDGELC FTVQVFDQSK CEKEAAFHSK  120
CTQNPIQFYI SIGQKRERDD GDDDGNKDSF LVRSCESMPK KVKRGQEESS LHETKQCWSP  180
CQNTAASSRL NICHEILDPK AEVAIQKRTG KEDRNLADRG YGSIFLEREK RVAQSFISCF  240
PYFVRIMKRF NISGSYTLNI PYQFSTAHLP SSKTEIVLRT IKGACWTVNS VPTTRVHTSH  300
TFCGGWMAFV RSNDIKIGDV CIFELVRKYE LRVFILRVGK EVVEDQSGNV APDGGSIDSM  360
STSHKIENFP KQSRKSGLKV HSRLITKVEV CDRKKSNKSQ AAAFCNRITK HGDAAKGSGT  420
EKQAEAIACS RKNLDVELSP HAAAGLRMMA EAAKSFTSGF PNFVRIMRKF NISGSYTLKI  480
PHQFSAAHLP NYKTEIILRN SHGERWTVNS VPDSKGRTVH TFCGGWMAFV RDNDVKEGDI  540
CMFELVTECE MLVHISGVGG KMLHSPS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013943
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574756.10.0B3 domain-containing protein Os01g0723500 isoform X2
TrEMBLB9R7J80.0B9R7J8_RICCO; Uncharacterized protein
STRINGXP_002510291.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-21B3 family protein