PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013941
Common NameRCOM_1592450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 368aa    MW: 39974.6 Da    PI: 7.793
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013941genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.8e-39147205462
         zf-Dof   4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                    + l+cprCds+ntkfCyynny+lsqPr+fCkaCrryWt+GG+lrnvP+Ggg+rkn k+s
  30170.m013941 147 EPLPCPRCDSNNTKFCYYNNYNLSQPRHFCKACRRYWTHGGTLRNVPIGGGTRKNSKRS 205
                    6789***************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027013.6E-33148203IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.571149203IPR003851Zinc finger, Dof-type
PROSITE patternPS013610151187IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-20153197IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MVVELSNERE QKHNSRDCPL IRTSSNSQST ETVKPIGNTC TESSLPPQYQ KYATDLQATR  60
LAVIKHCITT ACGCAGDQRA NALPLKPISL FPFAFLQNHY SLPLFASSKF LLFFEKTPKI  120
EMPTESTPGQ NNTNPVSHSH PPPKLAEPLP CPRCDSNNTK FCYYNNYNLS QPRHFCKACR  180
RYWTHGGTLR NVPIGGGTRK NSKRSRSYSS SITTSTTTTS ASALSSLNTP DQPDQSLPVL  240
AIPESVLTAK SENLSDNWNL NDEKVNLVSQ NGNFISLLSS QQGQGFMGMV GYGPGFGYGF  300
CDTGRENWVY PGMAYVNGGD AVEDGTSSGC NTWQQVEVGD AGGGLVDGEN NCLSWPGLAI  360
STPGKGFK
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013941
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015574052.10.0dof zinc finger protein DOF1.6
TrEMBLB9R7J40.0B9R7J4_RICCO; Zinc finger protein, putative
STRINGXP_002510287.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28013168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50410.14e-29OBF binding protein 1