PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30170.m013861

Common Name

LOC8278855, RCOM_1590090

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 274aa MW: 30420.3 Da PI: 8.8343

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30170.m013861	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.9	1.8e-08	172	212	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L 30170.m013861 172 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 212 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.434	163	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-13	164	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-14	167	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-13	169	218	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-6	173	212	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.39E-6	186	217	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEIDQLTSST ATEDQMEMIM MMDKLPDFFG AYNDVAHDLA PTTEFPGAST TSTTAVSAIP 60 HFMSSPHIAS SPSFMSLPSS VPFTNNNTPM QDESTPPFTS NLAAAERWRD MGEFPGANAY 120 STPSQKRNSM AAMREMIFRI AAMQPIHIDP ESVKPPKRRN VKISKDPQSV AARHRRERIS 180 ERIRILQRLV PGGTKMDTAS MLDEAIHYVK FLKTQVQSLE RAQASRPSTS SSSTGIGFPI 240 AMSSGSYFPM GKAYQQQQNA HHHRHQNVQH YGDA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30170.m013861

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002510202.1	0.0	transcription factor HEC2 isoform X1
TrEMBL	B9R7A9	0.0	B9R7A9_RICCO; Transcription factor, putative
STRING	XP_002510202.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF651	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67060.1	6e-42	bHLH family protein

Link Out ? help Back to Top
Phytozome	30170.m013861
Entrez Gene	8278855