PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30170.m013832
Common NameLOC8288566, RCOM_1589480
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 377aa    MW: 41431.3 Da    PI: 10.0661
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30170.m013832genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.6e-31305362359
                    -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    D ++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYeg+Hnh+
  30170.m013832 305 DDFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERALDDPMMLIVTYEGDHNHS 362
                    99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.1E-18256301IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.0E-32291362IPR003657WRKY domain
PROSITE profilePS5081129.93298364IPR003657WRKY domain
SuperFamilySSF1182902.88E-26301363IPR003657WRKY domain
SMARTSM007742.1E-37303363IPR003657WRKY domain
PfamPF031061.9E-26305361IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAVELMMGYS GDSFATKLQE NAVREAATAG IQSVEEVIKL LQQNQLQQPP QYYSETFSSS  60
SNSSDTNPPS TDNIMAVTDA AVNNFKKVIS LLGRTTRTGH ARFRRAPVSS PASPTQQEHP  120
KPPQQHQQVQ DPGPSAGPLN SQQSEQVSAF RVYQPTPIHR LPPLPNNHHH HHHHHQHQHQ  180
QQKAPLLVTK NGFSERSEAA PSINFSNSPS ISAATSFMSS LTGETDSLQR SMSSGFQFAN  240
PASSVGKPPL SSTSLKRKCN SMDDAALKCG SSSSRCHCSK KRKSRVKRVI RVPAISNKMA  300
DIPPDDFSWR KYGQKPIKGS PHPRGYYKCS SMRGCPARKH VERALDDPMM LIVTYEGDHN  360
HSHSTADATA VRVLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20291361271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00450DAPTransfer from AT4G24240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30170.m013832
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510171.10.0probable WRKY transcription factor 7
SwissprotQ9STX01e-116WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLB9R7780.0B9R778_RICCO; WRKY transcription factor, putative
STRINGXP_002510171.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.12e-87WRKY DNA-binding protein 7