PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30170.m013776 | ||||||||
Common Name | RCOM_1588490 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 230aa MW: 26224.9 Da PI: 7.4547 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.2 | 2.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s 30170.m013776 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58 79*******************************************98776 PP | |||||||
2 | K-box | 21.1 | 1.3e-08 | 100 | 162 | 9 | 72 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72 ++ + e+lqqe+++ k+++e++++++R l G+ + +l e + eq Le++lk++ +K+ + 30170.m013776 100 IADGQLEELQQEITRFKSQVEEMEKQLRILEGNLSHITTLCEAEYQEQILEEALKRVQVRKQ-V 162 778899**************************86666667777788************9995.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.2E-37 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.857 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-29 | 2 | 78 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.24E-37 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-26 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0032440 | Molecular Function | 2-alkenal reductase [NAD(P)] activity | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSGI 60 KSIEEILMRY VNLPEHERGR ALGKLKAEGD QSHRATSPPI ADGQLEELQQ EITRFKSQVE 120 EMEKQLRILE GNLSHITTLC EAEYQEQILE EALKRVQVRK QVLEDNCNNT SGRPPAANSQ 180 CDEAHIPIKN AYVNGFDTES PNNVLDWIRQ RDPQVEILNF LGSNGLLRLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 4e-19 | 1 | 81 | 1 | 80 | MEF2 CHIMERA |
6byy_B | 4e-19 | 1 | 81 | 1 | 80 | MEF2 CHIMERA |
6byy_C | 4e-19 | 1 | 81 | 1 | 80 | MEF2 CHIMERA |
6byy_D | 4e-19 | 1 | 81 | 1 | 80 | MEF2 CHIMERA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30170.m013776 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU142913 | 1e-81 | GU142913.1 Hevea brasiliensis MADS-box transcription factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015572503.1 | 1e-165 | agamous-like MADS-box protein AGL104 isoform X1 | ||||
Swissprot | Q1PFC2 | 3e-48 | AGL66_ARATH; Agamous-like MADS-box protein AGL66 | ||||
TrEMBL | B9R740 | 1e-169 | B9R740_RICCO; Mads box protein, putative | ||||
STRING | XP_002510133.1 | 1e-169 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13665 | 19 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77980.1 | 1e-50 | AGAMOUS-like 66 |
Link Out ? help Back to Top | |
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Phytozome | 30170.m013776 |
Publications ? help Back to Top | |||
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