PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30170.m013752 | ||||||||
Common Name | LOC8288504, RCOM_1587630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | LBD | ||||||||
Protein Properties | Length: 212aa MW: 23301.7 Da PI: 8.3361 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 97 | 2e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C++ C+l+ ++ p++q +++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++q++ 30170.m013752 2 SCNGCRVLRKGCSETCILRSCLhwitpPEAQGHATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWSGNWHVCQVA 97 6*************************99999***************************************************************** PP DUF260 92 aelal 96 +e++l 30170.m013752 98 VETVL 102 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.645 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR SCLHWITPPE AQGHATLFLA KFFGRSDLMS LISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQVAVET VLSGGILRPL PGLLSGVLAQ 120 NHDESSDRFS AEGYRLRNMM TWAQSKPYIN TNMNMNQASS DLNLSLTPKL TGSCRVKRGR 180 DHAVSFCTEE SSEMTTFESN GGDRKKLLNL FV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30170.m013752 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002510109.1 | 1e-157 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SN23 | 8e-68 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | B9R716 | 1e-156 | B9R716_RICCO; Uncharacterized protein | ||||
STRING | XP_002510109.1 | 1e-157 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 2e-67 | LOB domain-containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | 30170.m013752 |
Entrez Gene | 8288504 |