PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30170.m013679 | ||||||||
Common Name | LOC8265260, RCOM_1586500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bZIP | ||||||||
Protein Properties | Length: 161aa MW: 18641.1 Da PI: 8.5185 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 43.5 | 7.1e-14 | 62 | 116 | 5 | 59 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 ++ rr+ +NRe+ArrsR RKk +e L+ + +Le +N++Lk++l + +++ l 30170.m013679 62 RKRRRMVSNRESARRSRWRKKRHLEDLTVRLNQLEFQNRDLKSQLGSVLEHCRVL 116 5779999**************************************9999998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 7.3E-10 | 58 | 122 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.599 | 60 | 123 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.0E-10 | 60 | 116 | No hit | No description |
Pfam | PF00170 | 3.7E-12 | 62 | 117 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.31E-11 | 62 | 116 | No hit | No description |
CDD | cd14702 | 7.17E-14 | 63 | 114 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 65 | 80 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MFFSEEAVQF EKPVFEAGLT ASDIQQILSV LESPTTDSPS SSLEESNSIS NSNRVVHCVD 60 ERKRRRMVSN RESARRSRWR KKRHLEDLTV RLNQLEFQNR DLKSQLGSVL EHCRVLWREN 120 DRLTTEYLSL QTRLSDLCHV LVTMQAMQRA SLLSSSTSTL I |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 61 | 65 | RKRRR |
2 | 63 | 82 | RRRMVSNRESARRSRWRKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30170.m013679 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002510058.1 | 1e-113 | basic leucine zipper 4 | ||||
TrEMBL | B9R6W5 | 1e-112 | B9R6W5_RICCO; DNA binding protein, putative | ||||
STRING | XP_002510058.1 | 1e-112 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5996 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 5e-23 | basic leucine-zipper 5 |
Link Out ? help Back to Top | |
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Phytozome | 30170.m013679 |
Entrez Gene | 8265260 |