PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006598
Common NameRCOM_1573260
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family G2-like
Protein Properties Length: 536aa    MW: 59206.9 Da    PI: 6.3693
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006598genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.37.1e-33315369155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr+rWtpeLHe+Fvea+ +LGG+ekAtPk +l+lm+v+gLt++hvkSHLQkYR+
  30169.m006598 315 KPRMRWTPELHESFVEAIIKLGGAEKATPKGVLKLMNVEGLTIYHVKSHLQKYRI 369
                    79****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.375312372IPR017930Myb domain
SuperFamilySSF466892.33E-17313369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-30314370IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-24315370IPR006447Myb domain, plants
PfamPF002497.7E-9317368IPR001005SANT/Myb domain
PfamPF143798.3E-23406452IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MAELLFNLGM VSCWKRLFAA NLIQLFLRCY FFGFPVCIIF GSTSPVKLWK VLGLLASENE  60
SLSSKGITQP YFTTLSPVHD FFNSESEGQS CLTSEFSSSR PSPFMLTDSL SPNTMQSIVQ  120
PPKYFLKSGP DMPLSPASHI QHSKSTFQRS SVFCTSLYLS SSSSSETNRQ LGNLPFLPHP  180
SAHAHSLSAI DSTKSPLLFT DDISNPYDEE HSDCLMKDFV NFPGDASRSS FHGMTCASDN  240
LVLADQLELQ FLSDELDIAI TDHGENPRVD EIYETPEASS NPAIGSTCNL NVASVKPSAD  300
APSSHPSPGT AAVHKPRMRW TPELHESFVE AIIKLGGAEK ATPKGVLKLM NVEGLTIYHV  360
KSHLQKYRIA KYLPDKKEEK KASCSEEKKA ASSSTESDNQ KKGMTQITEA LRMQMEVQKQ  420
LHEQLEVQRA LQLRIEEHAR YLQKILEEQQ KAGGTSLSPK DLSSLTNPPE ASVLPPSQEV  480
VTLHPQSTES KTVSSSSKKK PTVDSEIEQP QRDKKIRVEK KPESAKEEAA VESPVQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-27315372259Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-27315372259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-27315372259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-27315372259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-27315372259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-27315372259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-27315372259Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-27315372259Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00354DAPTransfer from AT3G13040Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006598
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015571261.10.0myb family transcription factor PHL6 isoform X2
SwissprotQ949U21e-135PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLB9RHS20.0B9RHS2_RICCO; Transcription factor, putative
STRINGXP_002513291.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134691925
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.21e-108G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]