PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30169.m006322 | ||||||||
Common Name | LOC8272596, RCOM_1574830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | MYB | ||||||||
Protein Properties | Length: 354aa MW: 39919.2 Da PI: 4.9957 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++ Ed++l+ ++++G ++W++ ++ g+ R++k+c++rw +yl 30169.m006322 16 KGPWSPAEDLRLITFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYL 63 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.9 | 8.2e-17 | 69 | 114 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE++ ++ +++ lG++ W++Ia++++ gRt++++k+ w+++l 30169.m006322 69 RGNFTKEEEDTIITLHQTLGNK-WSKIASHLP-GRTDNEIKNVWNTHL 114 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 7 | 66 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.493 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.34E-30 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 16 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.28E-9 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 25.413 | 64 | 118 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-27 | 67 | 118 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.1E-16 | 69 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.41E-10 | 71 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MGKGRAPCCD KSQVKKGPWS PAEDLRLITF IQKHGHENWR ALPKQAGLLR CGKSCRLRWI 60 NYLRPDVKRG NFTKEEEDTI ITLHQTLGNK WSKIASHLPG RTDNEIKNVW NTHLKKKLSF 120 TDKDSDNRDE SKESLTTTSS SSSSSSTIMS CGKRVPDHDH DDQWNHGSVT KRTRVLDTIP 180 AGEAKEFPSS STSSNNSNVT NYSQVDDSKQ DDQIFNFSGP CDIVQNILEE VNKPEIDQDV 240 AVEIPFESDL DFWNMLDGLN SSLSMTNSIE SSCCQRSSNL GDAYKGGDEN KKWLRYLENE 300 LGLEEVTTKD GSPETLLDQA GIEEPLVTET FQYEIPVKPE VNPEVGYYHL WPSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 16 | 118 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-26 | 16 | 124 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-26 | 16 | 124 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 1e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-26 | 16 | 118 | 4 | 105 | C-Myb DNA-Binding Domain |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269|PubMed:19122102}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00249 | DAP | Transfer from AT1G79180 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30169.m006322 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19122102, ECO:0000269|PubMed:22197883, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002513377.1 | 0.0 | transcription factor MYB58 isoform X1 | ||||
Swissprot | Q6R0A6 | 4e-85 | MYB63_ARATH; Transcription factor MYB63 | ||||
TrEMBL | B9RI08 | 0.0 | B9RI08_RICCO; R2r3-myb transcription factor, putative | ||||
STRING | XP_002513377.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10029 | 30 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 1e-82 | myb domain protein 63 |
Link Out ? help Back to Top | |
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Phytozome | 30169.m006322 |
Entrez Gene | 8272596 |
Publications ? help Back to Top | |||
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