PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30169.m006306

Common Name

LOC8268849, RCOM_1574660

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

GRAS

Protein Properties

Length: 545aa MW: 61000.1 Da PI: 4.7775

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30169.m006306	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	366.5	3.7e-112	166	538	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalklfsevsPilkf 93 lv+lLl+cAeav +d++la+++La++ ++p gd++qR+ +f+ +L++rl+ ++ +++ ++++ e + +e++ a++l+++++P++ f 30169.m006306 166 LVHLLLACAEAVGCRDTQLANSVLAQIWASVNPFGDSLQRVSYCFALGLRSRLSLLQNATSNGTFANAAIEVSlitREEKMEAFQLLYQTTPYVAF 261 68*************************************************99666666655333333333566899999********** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak.rled 188 ++++aN+aI ea+ g++++H+iD+++ + lQWp+++++LasRpegpp++RiTg+ + ++++ ele+ + La+ A++lgv++efn+++++ + + 30169.m006306 262 GFMAANEAICEAARGKDALHVIDLGMDHTLQWPSFIRTLASRPEGPPKVRITGLIN-DHQNLLELEASMKVLAEDASSLGVSLEFNMILESvTPSL 356 **************************************************99.667999********************977769999 PP GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseeri 283 l+ e+L+++ gEal n++++lh++++es + + ++L+++k+lsP++++vveq+a+hn++ Fl rfle+l+yysa+fdsl ++ lpr+s++r+ 30169.m006306 357 LTRENLNLRDGEALFFNSIMHLHKFVKESRGSLK---AILQAIKRLSPTLLTVVEQDANHNGPFFLGRFLESLHYYSAIFDSLeASLLPRNSRQRM 449 9*********************88777666...9*****************************************5555899** PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 k+E+ +++ei+n+va eg +r+erhe++ +Wr++l++aGF+ + l+ ++qa+++l+ ++ dgy++ +++g+l+lgWk+rp++ +SaW+ 30169.m006306 450 KIEKLHFAEEIRNIVAYEGCDRIERHERADQWRRQLGRAGFQVMGLK--CMSQARMMLSVYGCDGYTLASDKGCLLLGWKGRPIMLASAWK 538 ***************************************9985..89*************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.633	140	520	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-109	166	538	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence Send to blast
MEAMNGWLSF PMYESFNHDL AIRRFCPARM EQEQGSGEWE ETVMNEFELL SPSDDATSTP 60 HDLAASEVDE LVDSFINVDH QDNGHDDHHQ SPDDLEYQDH FDHFQHDEMV ETFSMLNDIF 120 VDVPMMIGGG DLEMSTGSIE NSAAVGPGMV PSMEEVSYGV DRGLHLVHLL LACAEAVGCR 180 DTQLANSVLA QIWASVNPFG DSLQRVSYCF ALGLRSRLSL LQNATSNGTF ANAAIEVSLI 240 TREEKMEAFQ LLYQTTPYVA FGFMAANEAI CEAARGKDAL HVIDLGMDHT LQWPSFIRTL 300 ASRPEGPPKV RITGLINDHQ NLLELEASMK VLAEDASSLG VSLEFNMILE SVTPSLLTRE 360 NLNLRDGEAL FFNSIMHLHK FVKESRGSLK AILQAIKRLS PTLLTVVEQD ANHNGPFFLG 420 RFLESLHYYS AIFDSLEASL LPRNSRQRMK IEKLHFAEEI RNIVAYEGCD RIERHERADQ 480 WRRQLGRAGF QVMGLKCMSQ ARMMLSVYGC DGYTLASDKG CLLLGWKGRP IMLASAWKAH 540 NVPSS

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence Send to blast

MEAMNGWLSF PMYESFNHDL AIRRFCPARM EQEQGSGEWE ETVMNEFELL SPSDDATSTP  60
HDLAASEVDE LVDSFINVDH QDNGHDDHHQ SPDDLEYQDH FDHFQHDEMV ETFSMLNDIF  120
VDVPMMIGGG DLEMSTGSIE NSAAVGPGMV PSMEEVSYGV DRGLHLVHLL LACAEAVGCR  180
DTQLANSVLA QIWASVNPFG DSLQRVSYCF ALGLRSRLSL LQNATSNGTF ANAAIEVSLI  240
TREEKMEAFQ LLYQTTPYVA FGFMAANEAI CEAARGKDAL HVIDLGMDHT LQWPSFIRTL  300
ASRPEGPPKV RITGLINDHQ NLLELEASMK VLAEDASSLG VSLEFNMILE SVTPSLLTRE  360
NLNLRDGEAL FFNSIMHLHK FVKESRGSLK AILQAIKRLS PTLLTVVEQD ANHNGPFFLG  420
RFLESLHYYS AIFDSLEASL LPRNSRQRMK IEKLHFAEEI RNIVAYEGCD RIERHERADQ  480
WRRQLGRAGF QVMGLKCMSQ ARMMLSVYGC DGYTLASDKG CLLLGWKGRP IMLASAWKAH  540
NVPSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	2e-64	173	537	25	377	Protein SCARECROW
5b3h_D	2e-64	173	537	25	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30169.m006306

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002513361.1	0.0	DELLA protein RGL1
TrEMBL	B9RHZ2	0.0	B9RHZ2_RICCO; DELLA protein GAI1, putative
STRING	XP_002513361.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13251	27	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66350.1	8e-81	RGA-like 1

Link Out ? help Back to Top
Phytozome	30169.m006306
Entrez Gene	8268849