PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30169.m006225
Common NameLOC8277111, RCOM_1582830
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family GRAS
Protein Properties Length: 615aa    MW: 67440.7 Da    PI: 6.5785
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30169.m006225genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.91.7e-1132456152374
           GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                    +++L+e+A a+ +g++e a+++L+r+s+ ++p+g++ qRl  y+  AL++rl++       a +p + +e   +e++a+++l++e+sP++k+++++
  30169.m006225 245 KHTLVEAASAIYDGKTEVASEILTRVSQVSNPRGNSEQRLMEYMSMALKSRLNS-------ADNPPPVAELFAKEHIASTQLLYELSPCFKLGFMA 333
                    699**************************************************9.......334444444569*********************** PP

           GRAS  98 aNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                    aN aIl+++  +    +  H+iDfdi+qG Q+++Ll+aL++R +g+p +++iT+v+++++++ke+l+ +g  L+++Ae++gv+++fnv v+ +l d
  30169.m006225 334 ANLAILQSTVDQpnsgTGFHVIDFDIGQGCQYLNLLHALSERLNGKPaTVKITAVADNSAEEKERLKVVGTTLSQLAEQFGVSLHFNV-VSAKLGD 428
                    ********99887666677************************77666*********9999**************************9.799**** PP

           GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                    l+ e+L ++p+E laVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e  +yy alf+s+e+++ r++ er+k
  30169.m006225 429 LSRESLGCEPEEPLAVNFAFNLYRMPDESVSTENPRDELLRRVKGLAPRVVTLVEQEMNTNTAPFMARVNEGSSYYGALFESIESTVQRDHTERVK 524
                    ************************************************************************************************ PP

           GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    vE+  lgr++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+++a++ k+ l+  +  + g++v+e++g +++gW++++L+++SaWr
  30169.m006225 525 VEEG-LGRKLANSVACEGRDRVERCEVFGKWRARMGMAGFELKPVSQNIAESLKARLSSGNrvNPGFTVKEDNGGVCFGWMGKTLTVASAWR 615
                    ****.*************************************************99988776789**************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098549.33218593IPR005202Transcription factor GRAS
PfamPF035145.8E-111245615IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 615 aa     Download sequence    Send to blast
MASGFSGGGA DFYTGIAGRS MNSNNNPSQP PYRTQLSQMF LDPASQIAHQ RTTNTNLTTQ  60
SLIGKRTLAD FQAHQQQNYQ QQHQPNINPA LLLRSVKPRM YQHTSPISTL SPIDFSGNLS  120
PELPSLSQRY GGVPLLQQLR PHPINLGSGL PCMNTLQNHQ HRGGQETQKK MMNRLQELEK  180
QLLDDNDDEE GDAVSVITSA NSNSEWSETI QNLITSSSSS IPISPSPTSS SSSTSVTTPL  240
PNYSKHTLVE AASAIYDGKT EVASEILTRV SQVSNPRGNS EQRLMEYMSM ALKSRLNSAD  300
NPPPVAELFA KEHIASTQLL YELSPCFKLG FMAANLAILQ STVDQPNSGT GFHVIDFDIG  360
QGCQYLNLLH ALSERLNGKP ATVKITAVAD NSAEEKERLK VVGTTLSQLA EQFGVSLHFN  420
VVSAKLGDLS RESLGCEPEE PLAVNFAFNL YRMPDESVST ENPRDELLRR VKGLAPRVVT  480
LVEQEMNTNT APFMARVNEG SSYYGALFES IESTVQRDHT ERVKVEEGLG RKLANSVACE  540
GRDRVERCEV FGKWRARMGM AGFELKPVSQ NIAESLKARL SSGNRVNPGF TVKEDNGGVC  600
FGWMGKTLTV ASAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-4326261521375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30169.m006225
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002513664.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLB9RIU50.0B9RIU5_RICCO; DELLA protein GAI, putative
STRINGXP_002513664.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.10.0SCARECROW-like 8