PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30149.m000231
Common NameLOC8280371, RCOM_1518720
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family bHLH
Protein Properties Length: 377aa    MW: 40323.5 Da    PI: 8.859
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30149.m000231genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.3e-11311356655
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  30149.m000231 311 SIAERERRTRISGRLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 356
                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.145305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-14308370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.01E-11309360No hitNo description
Gene3DG3DSA:4.10.280.102.4E-13310368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-8311356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MAQNSPSWSK PEKPNTSGNT MYPPPPPPAS SSSSSTSSPQ RPTSIAPASG SGLTRFGSAP  60
GSFLTRAVDS VIGTTTSGRD FSALVNNNSN NNNNNSHHQY FSAGDSSSLT TESTCKVNSS  120
NDLRAPAKSG LQRSYGFNEI NGSLLRQKSS PAGFLSHHLA NENGFSITPG TGGYNSSNGP  180
NGGHTVSRLK SQLSFTRQDS LSQISEVSED IVEGINSNTG HHNSPHSYST TGFGMGSWDG  240
TNSIVFSGPP SKRMKNIDGD LFNCLNGLET QFSLPQTSLE MATVEKLLNI PEDSVPCKIR  300
AKRGCATHPR SIAERERRTR ISGRLKKLQD LVPNMDKQTS YADMLDLAVQ HIKGLQGEVQ  360
KLHKELENCT CGCKPTS
Cis-element ? help Back to Top
SourceLink
PlantRegMap30149.m000231
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002527387.10.0transcription factor bHLH128
SwissprotQ8H1029e-96BH128_ARATH; Transcription factor bHLH128
TrEMBLB9SN180.0B9SN18_RICCO; DNA binding protein, putative
STRINGXP_002527387.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-91bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]