PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30147.m014297 | ||||||||
Common Name | RCOM_1496800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | FAR1 | ||||||||
Protein Properties | Length: 216aa MW: 24023.6 Da PI: 6.2508 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.3 | 1.9e-11 | 72 | 119 | 3 | 51 |
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkkteke 51 + +YA+ vGFsvrk+ ++sk +g +++r+++Cskeg+r++ k+ e + 30147.m014297 72 FYKYARLVGFSVRKDWVNRSKVHGLVVSRKYTCSKEGYRRKALKT-EAQ 119 458*************************************99888.332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.9E-9 | 72 | 120 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MRMTEVVLVM KTWMSDSKCQ ISYLNVDHDC RSSNVAHASE AQCSPSSKDD SVAEGILKVG 60 TGFESDEHAY NFYKYARLVG FSVRKDWVNR SKVHGLVVSR KYTCSKEGYR RKALKTEAQV 120 ITSSSTPANG SESESIEIFL DEREAEDQDE DRVAKIQEKA GDNRNIKEAH ELSYRQRQHP 180 SADAAFYEIN MVNSISGGPP PASDTVSKTL LASNSA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30147.m014297 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B9R9F6 | 1e-160 | B9R9F6_RICCO; Uncharacterized protein | ||||
STRING | XP_002510831.1 | 1e-161 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF40 | 30 | 530 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32250.3 | 5e-09 | FAR1-related sequence 2 |
Link Out ? help Back to Top | |
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Phytozome | 30147.m014297 |