PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014133
Common NameLOC8258322, RCOM_1497850
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24764.5 Da    PI: 9.8336
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014133genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.52e-291059251
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                   rien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g+l e++s
  30147.m014133 10 RIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFAS 59
                   8***********************************************86 PP
2K-box77.14.6e-26811747100
          K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                    + ++e++ ++l++e+a L k+ie+L+ +qR+llG++L+s+s++eLq++ +qLe+sl++iRs+K +l++eq+e+l+ ke+ l een +Lr+k +e
  30147.m014133  81 SVAKEQHVQELTEESAALVKKIEELEISQRKLLGQGLSSCSIEELQEIHSQLERSLSNIRSRKVQLFKEQMEQLKAKERLLLEENIRLREKCAE 174
                    447899************************************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.469161IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-40160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-32376IPR002100Transcription factor, MADS-box
CDDcd002652.46E-40372No hitNo description
PRINTSPR004043.7E-30323IPR002100Transcription factor, MADS-box
PfamPF003193.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-2584172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.54388178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009838Biological Processabscission
GO:0009909Biological Processregulation of flower development
GO:0010150Biological Processleaf senescence
GO:0055114Biological Processoxidation-reduction process
GO:0080187Biological Processfloral organ senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVRGKIQMRR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KGRLSEFASN  60
EMQKTIERYR KHAKEVQAAG SVAKEQHVQE LTEESAALVK KIEELEISQR KLLGQGLSSC  120
SIEELQEIHS QLERSLSNIR SRKVQLFKEQ MEQLKAKERL LLEENIRLRE KCAENHWQHP  180
TQRKEIKTYL NSSSKKKSEV ETELFIGLPE MHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-20173173Myocyte-specific enhancer factor 2B
1tqe_Q3e-20173173Myocyte-specific enhancer factor 2B
1tqe_R3e-20173173Myocyte-specific enhancer factor 2B
1tqe_S3e-20173173Myocyte-specific enhancer factor 2B
5f28_C3e-20172172MEF2C
5f28_D3e-20172172MEF2C
6byy_A3e-20173173MEF2 CHIMERA
6byy_B3e-20173173MEF2 CHIMERA
6byy_C3e-20173173MEF2 CHIMERA
6byy_D3e-20173173MEF2 CHIMERA
6bz1_A3e-20173173MEF2 CHIMERA
6bz1_B3e-20173173MEF2 CHIMERA
6bz1_C3e-20173173MEF2 CHIMERA
6bz1_D3e-20173173MEF2 CHIMERA
6c9l_A3e-20173173Myocyte-specific enhancer factor 2B
6c9l_B3e-20173173Myocyte-specific enhancer factor 2B
6c9l_C3e-20173173Myocyte-specific enhancer factor 2B
6c9l_D3e-20173173Myocyte-specific enhancer factor 2B
6c9l_E3e-20173173Myocyte-specific enhancer factor 2B
6c9l_F3e-20173173Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMADS-box transcription factor that acts with AGL71 and AGL72 in the control of flowering time. Promotes flowering at the shoot apical and axillary meristems. Seems to act through a gibberellin-dependent pathway. Interacts genetically with SOC1 and its expression is directly regulated by SOC1 (PubMed:21609362). Plays a role in controlling flower organ senescence and abscission by repressing ethylene responses and regulating the expression of BOP2 and IDA (PubMed:21689171). {ECO:0000269|PubMed:21609362, ECO:0000269|PubMed:21689171}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00576DAPTransfer from AT5G62165Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014133
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002510866.11e-151MADS-box protein AGL42
SwissprotQ9FIS15e-84AGL42_ARATH; MADS-box protein AGL42
TrEMBLB9R9J11e-150B9R9J1_RICCO; Mads box protein, putative
STRINGXP_002510866.11e-151(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66630102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-79AGAMOUS-like 42