PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m014087
Common NameRCOM_1513950
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family WRKY
Protein Properties Length: 651aa    MW: 70617 Da    PI: 6.6721
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m014087genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.15e-30287346159
                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                    ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  30147.m014087 287 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCADDMTILITTYEGTHNHQ 346
                    58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-31272348IPR003657WRKY domain
SuperFamilySSF1182905.62E-27280348IPR003657WRKY domain
PROSITE profilePS5081128.07282348IPR003657WRKY domain
SMARTSM007749.3E-36287347IPR003657WRKY domain
PfamPF031062.8E-26288346IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
MEDHALMRRS GHGGLPKEEI PPPDSSSGGG DDQGSCREDI VAKVGNKRPY HETDDIKSSL  60
SEPNKDLSWN KQVGIATNKE RPTMDFYSKA SSSSPKQQDN WLESARAEME EVRKENQRLK  120
LYLGQMMKDY QALQKQFYEI IQQEETKKST STVDNHDHNL DHHQTVEEPE LVSLSLGRFS  180
SDYSIKDGKS KTSSQGKDDN EIANNEGLFL GLDCKFEVSE VINGNEQSLR PSPVDSFEEQ  240
PKEEDGETWP PKVLKNTMPG GEDEALQQNP LKKARVCVRA RCDTPTMNDG CQWRKYGQKI  300
AKGNPCPRAY YRCTVAPSCP VRKQVQRCAD DMTILITTYE GTHNHQLPLS ATAMASTTSA  360
AASMLLSGSS SSSRTGPNHS SPTTSIPADL HGLKFFLSNN SYDSKQFNLH NSSLSTSPSH  420
PTITLDLTNS SNPPSSSTFI NRPFSSTYPP VPKFAPPNTL NFGSSESSGM PWSNGFFSYG  480
NNTSQPYNKN PLIGSLNLGR SIMENNIFQS YMQKKTPATT TTHQQALPDT IAAATKAITA  540
DPSFQSALAA ALTSIIGTGN SGSSGVGSGG GSLNLGSGDN MAQNLKWGEN FSVASSCSST  600
ITTPKGNACA TSYLNKTTST NSQPGNLMLL PPNSLPFSSP KSPNDSRDHA S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-20274348174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m014087
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015578415.20.0probable WRKY transcription factor 61
TrEMBLB9R9610.0B9R961_RICCO; WRKY transcription factor, putative
STRINGXP_002511536.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-75WRKY DNA-binding protein 72