PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30147.m014038

Common Name

LOC8258147, RCOM_1512960

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

bHLH

Protein Properties

Length: 275aa MW: 29989.2 Da PI: 5.6946

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30147.m014038	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.2e-11	156	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq 30147.m014038 156 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 203 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.15E-10	150	207	No hit	No description
SuperFamily	SSF47459	4.58E-18	150	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	152	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.4E-18	152	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-8	156	203	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MDPPLISETS FSAANPSSYT LTEIWPFSAL NGDASAGLGL RVGNLSAGFG ERDGSVEEST 60 VTEQSVGGGR KRRDFSSEDE SSKMVSTSSS GNELQDSNVK RMKISGSQNE NGKSKAEVEA 120 SSANDKNAAE QNSKISEPPK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP 180 GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS MKLEAVNSRM GMNPTVEGFH PKDADAQPFD 240 ATGMIFGPQV ARDYAQASHH EWLHMQIGGN LERTA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30147.m014038

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF022012	1e-127	KF022012.1 Jatropha curcas basic helix-loop-helix protein (bHLH) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002511487.1	0.0	transcription factor bHLH79
Swissprot	Q9LV17	4e-91	BH079_ARATH; Transcription factor bHLH79
TrEMBL	B9R912	0.0	B9R912_RICCO; DNA binding protein, putative
STRING	XP_002511487.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-93	bHLH family protein

Link Out ? help Back to Top
Phytozome	30147.m014038
Entrez Gene	8258147

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]