PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m013945
Common NameRCOM_1510540
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family Dof
Protein Properties Length: 326aa    MW: 36421.5 Da    PI: 7.8232
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m013945genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.15.1e-4043102261
         zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                    +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+
  30147.m013945  43 HDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKV 102
                    6899******************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-293797IPR003851Zinc finger, Dof-type
PfamPF027011.1E-3344101IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.18947101IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010067Biological Processprocambium histogenesis
GO:0010087Biological Processphloem or xylem histogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MARKWSALSG TIHEETGMDS SSPSGDMLTC SRPLIERRLR PPHDQALKCP RCDSTHTKFC  60
YYNNYSLSQP RYFCKTCRRY WTKGGTLRNI PVGGGCRKNK KVAKKSNSNE HHQPINQNNL  120
GSSSSHHNPT DLHLSFPDQV QFSHLNNILN TQGTLANPTF MESKYSIGML ENPRPIDFME  180
SKLEAIVGSS STSRNYDFMG NSDMGMVSGL GDQINHHHHH HHHHQGLAPN YHGLCSPFGM  240
SMDGSNGTFM ETCQRLMLPY DHQGNDEQNT IDVKPNAKLL SLEWQEQGQG CSHDGGKDTF  300
GYLNNLGSSW TGMMNGYGSS TTNPLV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00580DAPTransfer from AT5G62940Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m013945
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015579469.10.0dof zinc finger protein DOF5.6
TrEMBLB9RB200.0B9RB20_RICCO; Zinc finger protein, putative
STRINGXP_002511395.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50923456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62940.11e-54Dof family protein