PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30147.m013937
Common NameRCOM_1510450
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family MYB
Protein Properties Length: 366aa    MW: 42029.6 Da    PI: 7.4195
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30147.m013937genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.6e-17111157148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT +Ed ll ++v+q+G + W+ Ia++++ gR +kqc++rw+++l
    30147.m013937 111 KGQWTIDEDRLLSQLVEQYGIRKWSHIAQMLP-GRIGKQCRERWHNHL 157
                      799*****************************.*************97 PP
2Myb_DNA-binding56.46.7e-18163205145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++ W++eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
    30147.m013937 163 KDVWSEEEDKVLIKAHAEIGNK-WAEIAKRLP-GRTENSIKNHWN 205
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129428.644106161IPR017930Myb domain
SuperFamilySSF466893.95E-31108204IPR009057Homeodomain-like
SMARTSM007171.3E-14110159IPR001005SANT/Myb domain
PfamPF002498.5E-16111157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-26112164IPR009057Homeodomain-like
CDDcd001675.15E-14114157No hitNo description
PROSITE profilePS5129421.393162212IPR017930Myb domain
SMARTSM007171.1E-16162210IPR001005SANT/Myb domain
PfamPF002491.8E-16163205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-22165210IPR009057Homeodomain-like
CDDcd001671.07E-12166208No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MDLYDYECKP LADINNIGSG GHGQVMDNFQ NGGHLLHLSP IDMVGSNKVQ GHMSLNLQEM  60
KPISFVVPDE VSSVTANNHE YPKNVGVNKN NRVSASTRKT WKARKKNNVV KGQWTIDEDR  120
LLSQLVEQYG IRKWSHIAQM LPGRIGKQCR ERWHNHLRPD IKKDVWSEEE DKVLIKAHAE  180
IGNKWAEIAK RLPGRTENSI KNHWNATKRR QYSKRKCRSK YPRGSLLQDY IKSLNLDPCP  240
GRSYNQGKSC ATDHAIASDL NNTMKLAQNN QPQVALEFVQ NDRLVPNYVF NEVADFDFDE  300
KIMFQEGCSF DSLLDGIPCD HHHNHVVDEK SFEINMAVED DMTPLMMDFE VKKELDLVEM  360
ISQAKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-421092112104C-Myb DNA-Binding Domain
1msf_C2e-421092112104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap30147.m013937
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002511387.20.0transcription factor MYB98
SwissprotQ9S7L28e-97MYB98_ARATH; Transcription factor MYB98
TrEMBLB9RB120.0B9RB12_RICCO; Myb119, putative
STRINGXP_002511387.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-99myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]