PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30146.m003568
Common NameLOC8274475, RCOM_1493760
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family HD-ZIP
Protein Properties Length: 758aa    MW: 84301 Da    PI: 5.869
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30146.m003568genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.22.2e-21106161156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  30146.m003568 106 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 161
                    7999************************************************9877 PP
2START229.31.1e-712734971206
                    HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
          START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                    e+a++a++el+k+a+a+ep+W +s+    e++n+de++++f  ++       +s+e++r++gvv+ +l++lv+++ d++  W+e+++    ka+t+
  30146.m003568 273 EIANQAMEELNKMATAGEPLWIRSVetdrEILNYDEYIKEFNVENPsngrskKSIEVSRETGVVFVDLPRLVQSFTDVN-HWKEMFPclisKAATV 367
                    57899************************************77766999******************************.**************** PP

                    EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
          START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                    +vi++g      ga+qlm+ae q+l+p+vp R+++fvRy++ql+a++w+ivdvS+d+ +++  ++s+v+++++pSg++ie+ksngh+kvtwveh +
  30146.m003568 368 DVICNGegpnrdGAVQLMFAEVQMLTPMVPtREVYFVRYCKQLSAEQWAIVDVSIDNVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLE 462
                    ************************************************************98.9******************************** PP

                    --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    ++++++h ++r +v++gla+ga++wvatlq qce+
  30146.m003568 463 CQKSTVHTIYRTIVNTGLAFGARHWVATLQLQCER 497
                    *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-2391157IPR009057Homeodomain-like
SuperFamilySSF466898.77E-2195164IPR009057Homeodomain-like
PROSITE profilePS5007118.22103163IPR001356Homeobox domain
SMARTSM003898.3E-19105167IPR001356Homeobox domain
PfamPF000461.0E-18106161IPR001356Homeobox domain
CDDcd000865.49E-17110161No hitNo description
PROSITE patternPS000270138161IPR017970Homeobox, conserved site
PROSITE profilePS5084839.648264500IPR002913START domain
SuperFamilySSF559612.33E-34266497No hitNo description
CDDcd088753.04E-111268496No hitNo description
Gene3DG3DSA:3.30.530.202.0E-6271492IPR023393START-like domain
SMARTSM002342.8E-75273497IPR002913START domain
PfamPF018525.5E-58273497IPR002913START domain
SuperFamilySSF559612.06E-15527745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 758 aa     Download sequence    Send to blast
MGVDMSNPPS SRTKDFFASP ALSLSLAGIF RGANAAGPAT PAMEVEEGDE GSGGGGERGR  60
REETVEVSSE NSGPMRSRSD DDFDGEGEHE DDDGGDGDDK NKKKKRKKYH RHTAEQIREM  120
EALFKESPHP DEKQRQQLSK QLGLAPRQVK FWFQNRRTQI KAIQERHENS LLKTEMEKLR  180
DENKAMRETI NKACCPNCGT ATTSRDTSLT TEEQQLRIEN AKLKSEVEKL RAALGKYPPG  240
AAPSCSAGSE QENRSSLDFY TGIFGLEKSR ITEIANQAME ELNKMATAGE PLWIRSVETD  300
REILNYDEYI KEFNVENPSN GRSKKSIEVS RETGVVFVDL PRLVQSFTDV NHWKEMFPCL  360
ISKAATVDVI CNGEGPNRDG AVQLMFAEVQ MLTPMVPTRE VYFVRYCKQL SAEQWAIVDV  420
SIDNVEDNID ASLVKCRKRP SGCIIEDKSN GHCKVTWVEH LECQKSTVHT IYRTIVNTGL  480
AFGARHWVAT LQLQCERIVF FMATNVPTKD STGVATLAGR KSILKLAQRM TWSFCRAIGA  540
SSYHTWNRVT SKTGEDIRIS SRKNLNDPAE PLGVILCAVS SVWLPVSPHV LFDYLRDDTH  600
RNEWDIMSNG GQVQSIANLA KGQDRGNAVT IQTMKSNENN MWVLQDCCTN AYESIVVYAP  660
VDINGMQSVI TGCDSSSTAI LPSGFAILPD GLETRALVIT SRREEKRTEG GSLLTVAFQI  720
LTNTSPTAKL TMESVESVNT LISCTLRNIK TSLQCEDT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1101106KKKKRK
2101107KKKKRKK
3103107KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30146.m003568
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002516023.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLB9RQK40.0B9RQK4_RICCO; Homeobox protein, putative
STRINGXP_002516023.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]