PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 30146.m003443 | ||||||||
Common Name | RCOM_1486290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
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Family | bHLH | ||||||||
Protein Properties | Length: 395aa MW: 43425.2 Da PI: 8.2307 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.4 | 5.2e-08 | 299 | 339 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L 30146.m003443 299 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 339 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 290 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-14 | 295 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-13 | 296 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.4E-12 | 298 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-5 | 299 | 339 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.97E-4 | 312 | 344 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDLADDIFNQ IQGFQKAQTS QLNSNSDRRQ ETSTLVANTL VAKSGNGTSW VDASNQELFS 60 SPLITIKPYA TTGFGLNNQS RIMNGLPNGK AGVPTGSLES LDCLLSATNS NTDTSVEDDG 120 ISMIFSDCRN LWNFSANSAA SSGESENNTS NARNKEMHCP DETVSQSISS DKKCSQTSKP 180 VSTKRSNDQT ELKADIFDLL QTNSCTTQGG FRLISENPSK SKRLRSDNKK PSSSNINFQQ 240 PSSSVSSSIE EPDPEAIAQM KEMIYRAAAF RPVNLGLEVV EKPKRKNVRI STDPQTVAAR 300 QRRERISERI RVLQRLVPGG SKMDTASMLD EAANYLKFLR SQVKALENLG HKLEVNSPPT 360 NIAFSSLPFN SHPFHPMQTH FSSLQNPNHI HHPQS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 299 | 304 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 30146.m003443 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002515900.2 | 0.0 | transcription factor bHLH87 | ||||
Refseq | XP_015572814.1 | 0.0 | transcription factor bHLH87 | ||||
Refseq | XP_025012549.1 | 0.0 | transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 3e-96 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | B9RQ81 | 0.0 | B9RQ81_RICCO; DNA binding protein, putative | ||||
STRING | XP_002515900.1 | 0.0 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4530 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 9e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 30146.m003443 |
Publications ? help Back to Top | |||
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