PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 30138.m004081
Common NameLOC8263435, RCOM_1472500
Organism
Ricinus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus
Family ZF-HD
Protein Properties Length: 95aa    MW: 10382.7 Da    PI: 8.6143
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
30138.m004081genomeJCVIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1024e-322683260
    ZF-HD_dimer  2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60
                   ++vrY eC+kNhAa++Gg+avDGC+Efm+s ge++   al CaACgCHRnFHRreve+e
  30138.m004081 26 RNVRYGECQKNHAANIGGYAVDGCREFMAS-GEDAANGALICAACGCHRNFHRREVETE 83
                   579**************************9.9999********************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-25292IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-292780IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.2E-262980IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.5033079IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048509Biological Processregulation of meristem development
Sequence ? help Back to Top
Protein Sequence    Length: 95 aa     Download sequence    Send to blast
MMKKRQVVLK RDVSGRASTT SSSVVRNVRY GECQKNHAAN IGGYAVDGCR EFMASGEDAA  60
NGALICAACG CHRNFHRREV ETEVVCEYSP PNSSR
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors by interacting with them to prevent both their nuclear localization and their DNA-binding properties. Involved in integrating signals from multiple hormones by regulating the expression of specific genes. Promotes the formation of ectopic shoot meristems on leaf margins. {ECO:0000269|PubMed:21455630}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap30138.m004081
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002514762.14e-65mini zinc finger protein 3
SwissprotQ2Q4936e-40MIF3_ARATH; Mini zinc finger protein 3
TrEMBLB9RLZ31e-63B9RLZ3_RICCO; Transcription factor, putative
STRINGXP_002514762.12e-64(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF155034100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18835.15e-38mini zinc finger