PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30138.m004065

Common Name

LOC8263419, RCOM_1471640

Organism

Ricinus communis

Taxonomic ID

3988

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae; Ricinus

Family

Dof

Protein Properties

Length: 488aa MW: 53035.1 Da PI: 6.5124

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30138.m004065	genome	JCVI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1.1e-39	128	188	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCkaC+ryWt+GG++rnvPvG+grrknk+s 30138.m004065 128 PDKILPCPRCNSMDTKFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKNSA 188 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-31	121	185	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.0E-32	130	186	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.826	132	186	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	134	170	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MQENTTKDPA IRLFGKKIPL TADLDPPVIP GQELPSLERV AVEEDEEEMK AEKELSAGKV 60 TDTQEEDDED DTPIQDTEES AEPEKLGETD VNPKTPSINE ESAKSKNSKS EKQQNDGTNT 120 QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NINQPRHFCK ACQRYWTAGG TMRNVPVGAG 180 RRKNKNSASH YRHITISEAL QAARIEAPNG TCNNPALRPN GRVLSFGLDT PICDSMASVL 240 SLADKKVLNS SRNGFHHFED KMTRVPCKGR ENGGDDCSGG SSVTVSNSME EGRRTGAQEP 300 FMPSINGFAS PITCLSGVPW AYPWNSALPP PPAFCPPPPG FPMSFYPPIW NCGVAGGWNI 360 PLLSPQSSSS SSNQKASSSP NSPTLGKHSR DGDALKPDDL GKEEPGKRKN GCVLVPKTLR 420 IDDPNEAAKS SIWATLGIKN ESFNGGGLLK ALQPKSDEKN HIPQTSSSSV LRANPAALSR 480 SINFHEST

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MQENTTKDPA IRLFGKKIPL TADLDPPVIP GQELPSLERV AVEEDEEEMK AEKELSAGKV  60
TDTQEEDDED DTPIQDTEES AEPEKLGETD VNPKTPSINE ESAKSKNSKS EKQQNDGTNT  120
QEKTLKKPDK ILPCPRCNSM DTKFCYYNNY NINQPRHFCK ACQRYWTAGG TMRNVPVGAG  180
RRKNKNSASH YRHITISEAL QAARIEAPNG TCNNPALRPN GRVLSFGLDT PICDSMASVL  240
SLADKKVLNS SRNGFHHFED KMTRVPCKGR ENGGDDCSGG SSVTVSNSME EGRRTGAQEP  300
FMPSINGFAS PITCLSGVPW AYPWNSALPP PPAFCPPPPG FPMSFYPPIW NCGVAGGWNI  360
PLLSPQSSSS SSNQKASSSP NSPTLGKHSR DGDALKPDDL GKEEPGKRKN GCVLVPKTLR  420
IDDPNEAAKS SIWATLGIKN ESFNGGGLLK ALQPKSDEKN HIPQTSSSSV LRANPAALSR  480
SINFHEST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00394	DAP	Transfer from AT3G47500	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	30138.m004065

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002514746.1	0.0	cyclic dof factor 3
Swissprot	Q8LFV3	1e-122	CDF3_ARATH; Cyclic dof factor 3
TrEMBL	B9RLX7	0.0	B9RLX7_RICCO; Zinc finger protein, putative
STRING	XP_002514746.1	0.0	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	1e-104	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	30138.m004065
Entrez Gene	8263419

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Corrales AR, et al. Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis. Plant Cell Environ., 2017. 40(5): p. 748-764 [PMID:28044345] Renau-Morata B, et al. Ectopic Expression of CDF3 Genes in Tomato Enhances Biomass Production and Yield under Salinity Stress Conditions. Front Plant Sci, 2017. 8: p. 660 [PMID:28515731] Henriques R, et al. The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering. New Phytol., 2017. 216(3): p. 854-867 [PMID:28758689]